Table 1 Box C/D snoRNAs in chicken

GGgCD1

1

98

5.8S-U-14

13 nt (5')

HBII-239

AP1G1 (intron 11)

GGgCD2

1

91

18S-A-99

13 nt (3')

snR51

U57

NOL5A (intron 9)

GGgCD3

1

83

18S-U-116

12 nt (3')

U42A/B

RPL23A (intron 3)

U4-C-8

11 nt (5')

U91/mgU12-22/U4-8

GGgCD4

1

84

18S-U-121

11 nt (5')

Z17a/b/mgh18s-121

RPL23A (intron 2)

GGgCD5

2

103

18S-A-158

17 nt (3')

U45A/C

RABGGTB (intron 1,2)

18S-U-171

13 nt (5')

U45A/C

GGgCD6

1

90

18S-A-165

10 nt (3')

U44

mRNA CR387333 (intron 7)

GGgCD7

1

96

18S-U-389

12 nt (5')

HBII-202

RPL13 (intron 2)

GGgCD8

1

100

18S-G-397

10 nt (5')

HBII-429

RPS12 (intron 4)

GGgCD9

3

113

18S-C-423

14 nt (3')

U14

U14

U14A/B

HSPA8 (intron 5,6,8)

28S-C-3358

11 nt (3')

snoR37

U53/snoRD122

GGgCD10

2

109

18S-A-429

13 nt (3')

snR52

snoR52Y

U83a/b

LOC771432 (intron 1);

chr1_11.94 (intron 8)

28S-C-3190

11 nt (5')

snR76

HBII-180a/b/c

GGgCD11

2

124

18S-A-445

11 nt (5')

snR87

snoR15

U16

RPL4 (intron 1,3)

GGgCD12

2

99

18S-G-470

12 nt (3')

HBII-95/snoRD11B

NOP5/58 (intron 8,9)

GGgCD13

2

95

18S-A-473

12 nt (3')

HBII-234

NOP5/58 (intron 3,6)

GGgCD14

1

91

18S-A-551

12 nt (5')

snR41

snoR41Y

U62A/B

LOC417177 (intron 8)

GGgCD15

3

104

18S-G-562

11 nt (5')

HBII-251/U103

PUM1 (intron 9,12,21)

GGgCD16

1

101

18S-U-588

13 nt (5')

snR77

HBII-135

mRNA CR391615 (intron 4)

GGgCD17

1

86

18S-G-605

11 nt (3')

U54

U54

RPS20 (intron 3)

GGgCD18

2

98

18S-A-629

14 nt (3')

snR47

U36Ia

U36a/B

RPL7A (intron 3,4)

28S-A-3213

13 nt (5')

snR47

U36IIa

U36C

GGgCD19

3

89

18S-G-644

11 nt (3')

HBII-108

GNL3 (intron 5,7,9)

GGgCD20

1

84

18S-C-757

11 nt (3')

COX7C (intron 1)

GGgCD21

2

86

18S-G-825

11 nt (5')

HBII-419

CCAR1 (intron 11);

AP2B1 (intron 16)³

GGgCD22

1

93

18S-A-989

17 nt (5')

snR54

U59

U59A/B

ATP5B (intron 2)

GGgCD23

2

99

18S-C-1230

12 nt (5')

HBII-142

EIF4G1 (intron 11,14)

GGgCD24

1

92

18S-U-1246

13 nt (5')

HBII-55

NOL5A (intron 6)

GGgCD25

2

89

18S-G-1286

12 nt (5')

snR40

snR21

U32A/B

KPNB1 (intron 4,7)

GGgCD26

1

89

18S-U-1397

12 nt (3')

U61

U61

RBMX (intron 2)

GGgCD27

1

101

18S-G-1402

10 nt (3')

SNORD118

PRPF39 (intron 10)

GGgCD28

1

88

18S-A-1633

11 nt (5')

U82/Z25

NCL (intron 5)

GGgCD29

2

101

18S-C-1659

10 nt (5')

snR70

U43

U43

chr1_11.94 (intron 3,6)

GGgCD30

1

98

18S-U-1758

18 nt (3')

U20

NCL (intron 11)

GGgCD31

1

93

28S-A-413

13 nt (5')

U81/Z23

mRNA CR387333 (intron 12)

GGgCD32

1

115

28S-G-1253

13 nt (3')

U21

RPL5 (intron 4)

GGgCD33

3

94

28S-A-1263

13 nt (5')

U18

U18

U18a/b/c

RPL4 (intron 2,5,6)

GGgCD34

1

88

28S-G-1457

19 nt (5')

snR39b

snoR39BY

snR39B

EIF4A2 (intron 3)

GGgCD35

1

95

28S-A-1459

14 nt (5')

snR39/snR59

U51

U32A/B/U51

EEF1B2 (intron 3)

GGgCD36

2

98

28S-A-1469

9 nt (5')

snR60

U80

U77/80

mRNA CR387333 (intron 4,5)

28S-G-1560

15 nt (3')

snR60

U80

U80/Z15

GGgCD37

2

92

28S-A-1792

11 nt (5')

snR61

U38

U38a/b

RPS8 (intron 4,5)

GGgCD38

1

92

28S-C-2112

12 nt (3')

U24

U24

U24

RPL7A (intron 1)

28S-C-2126

11 nt (5')

U24

GGgCD39

1

104

28S-A-2124

9 nt (5')

U24

U24

U76/Z20

mRNA CR387333 (intron 3)

GGgCD40

1

92

28S-C-2183

13 nt (5')

mgh28S-2409

ENSGALESTG00000033205 (intron 5)

GGgCD41

1

91

28S-G-2185

13 nt (5')

mgh28S-2411

ENSGALESTG00000033205 (intron 8)

GGgCD42

1

86

28S-A-2548

13 nt (3')

HBII-420

EST CK986810 (intron 4)

GGgCD43

1

100

28S-C-2565

10 nt (3')

snoR15

U39/U55

RPS8 (intron 1)

GGgCD44

1

93

28S-A-2576

13 nt (3')

U95

GNB2L1 (intron 6)

GGgCD45

1

102

28S-A-3207

17 nt (5')

U37

EEF2 (intron 6)

GGgCD46

3

92

28S-G-3233

11 nt (5')

HBII-276

EST BU308261(intron 1,2,3)

GGgCD47

2

122

28S-A-3249

11 nt (3')

snR63

U40

U40/U46

RPS8 (intron 2,3)

GGgCD48

3

158

28S-A-3274

10 nt (3')

snR13

U15

U15a/b

RPS3 (intron 4,5,6)

GGgCD49

1

90

28S-A-3274

10 nt (5')

snR13

U15

U15a/b

RFWD2 (intron 6)³

GGgCD50

2

269

28S-U-3307

12 nt (5')

HBI-43

DKC1 (intron 4,8)

GGgCD51

1

95

28S-A-3319

13 nt (5')

snoR44

U79/Z22

mRNA CR387333 (intron 9)

GGgCD52

1

90

28S-C-3330

12 nt (5')

snR64

snoR44

U74/Z18

mRNA CR387333 (intron 1)

GGgCD53

2

106

28S-A-3356

14 nt (3')

HBII-316

WDR43 (intron 4,5)

GGgCD54

2

101

28S-C-3358

13 nt (3')

snoR37

U53/snoRD122

WDR43(intron 3,9)

GGgCD55

1

117

28S-C-3358

10 nt (5')

U53/snoRD122

NOL5A (intron 7)

GGgCD56

1

97

28S-C-3376

12 nt (5')

U47

mRNA CR387333 (intron 11)

GGgCD57

4

104

28S-G-3388

12 nt (5')

snR190

HBII-99

EST BU281079 (intron 1,2,3,4)

GGgCD58

2

94

28S-G-3433

14 nt (5')

HBII-82/snoRD111B

SF3B3 (intron 3,6)

GGgCD59

1

96

28S-G-3502

11 nt (3')

U102

RPL21 (intron 3)

GGgCD60

1

89

28S-C-3514

13 nt (5')

U75

mRNA CR387333 (intron 2)

GGgCD61

5

89

28S-U-3682

12 nt (5')

Z20

snoR10

U58a/b

RPL17 (intron 4,5,6); mRNA CR352619 (intron 4, 5)

28S-G-3683

12 nt (5')

U58a/b

GGgCD62

1

89

28S-G-3683

12 nt (5')

U58a/b

RPL17 (intron 1)

GGgCD63

1

108

28S-G-3825

14 nt (5')

snR48

U60

Chr14_2.70 (intron 9)³

GGgCD64

1

92

28S-G-3847

11 nt (5')

snR38

snoR38Y

snR38a/b/c

ENSGALG00000001886 (intron 2)

GGgCD65

1

100

28S-C-3911

12 nt (5')

U49a/b

mRNA CR391615 (intron 2)

GGgCD66

1

87

28S-G-3949

10 nt (3')

HBII-210

GNL3 (intron 8)

GGgCD67

1

109

28S-C-3991

13 nt (5')

snR73

U35

U35A/B

RPS11(intron 4)

GGgCD68

1

91

28S-A-4026

12 nt (5')

U63

HSPA9 (intron 11)

GGgCD69

2

100

28S-G-4073

14 nt (5')

HBII-296a/b/c

TSR1 (intron 8,11)

GGgCD70

1

94

28S-U-4075

13 nt (5')

HBII-240

RPL37 (intron 3)

28S-G-4078

11 nt (5')

U78

GGgCD71

1

89

28S-G-4078

11 nt (5')

U78

mRNA CR387333 (intron 8)

GGgCD72

2

92

28S-G-4092

12 nt (5')

SNORD121

UBAP2 (intron 13,15)

GGgCD73

1

84

U1-A-70

21 nt (3')

U90

chr12_1.25 (intron 10)³

GGgCD74

1

130

U2-G-12

10 nt (5')

HBII-289

mRNA CR389573 (intron 1)³

GGgCD75

1

87

U2-A-30

10 nt (3')

Z32/mgU2-19_30

chr1_38.156 (intron 23)

GGgCD76

1

160

U2-U-47

13 nt (3')

TRRAP (intron 1)

GGgCD77

1

109

U4-C-8

13 nt (3')

U91/mgU12-22/U4-8

RFWD2 (intron 11)

GGgCD78

1

294

U4-A-66

11 nt (3')

U87

ATG16L1 (intron 9)

U5-U-40

12 nt (5')

U87/U88

GGgCD79

1

284

U5-U-40

11 nt (5')

U87/U88

ATG16L1 (intron 11)

GGgCD80

1

342

U5-C-45

11 nt (3')

U85/U89

NCAPD2 (intron 3)

GGgCD81

1

120

U6-A-47

11 nt (3')

Z30

Z30/mgU6-47

mRNA CR389942 (intron 1)³

GGgCD82

1

129

U6-C-60

13 nt (3')

HBII-166

CKAP5 (intron 35)

GGgCD83

1

163

U6-C-62

10 nt (5')

U94

PTCD3 (intron 12)

Orphan box C/D snoRNAs

GGoCD1

1

92

SNORD120

chr1_34.43 (intron 1)³

GGoCD2

1

104

SNORD125

AP1B1 (intron 14)

GGoCD3

1

109

HBII-295

RC3H2 (intron 5)

GGoCD4

1

108

mRNA BX932828 (intron 2)

GGoCD5

1

97

DKC1 (intron 5)

GGoCD6

1

97

DKC1 (intron 9)

GGoCD7

1

93

U73b

RPS3A (intron 5)

GGoCD8

2

87

SNORD123

chr2_17.1 (intron 5)³; IR

GGoCD9

1

107

MED24 (intron 14)

GGoCD10

1

93

U101

RPS12 (intron 3)