Table 5 Motif similarity between neighboring unique promoters
| Â | Similara | Intermediatea | Differenta | # of used pairs | # of omitted pairs | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | allb | high qualityc | capd | all | high quality | cap | all | high quality | cap | all | high quality | cap | all | high quality | cap |
Observed value (shared motifs allowed) | 17.81 | 16.44 | 15.47 | 16.36 | 16.90 | 21.13 | 65.83 | 66.67 | 63.40 | 1516 | 1083 | 530 | 8224 | 4200 | 983 |
Observed value (shared motifs not allowed) | 16.64 | 15.06 | 14.34 | 15.50 | 15.91 | 19.96 | 67.86 | 69.03 | 65.70 | 1484 | 1056 | 516 | 8256 | 4227 | 997 |
Random meane | 8.48 | 8.25 | 7.60 | 10.45 | 10.96 | 11.96 | 81.07 | 80.79 | 80.44 | 1516 | 1083 | 530 | 8224 | 4200 | 983 |
p-valuef (random >= observed value, shared motifs allowed) | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | -- | -- | -- | -- | -- | -- |
p-valuef (random <= observed value, shared motifs allowed) | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | -- | -- | -- | -- | -- | -- |
p-valuef (random >= observed value, shared motifs not allowed) | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | -- | -- | -- | -- | -- | -- |
p-valuef (random <= observed value, shared motifs not allowed) | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | -- | -- | -- | -- | -- | -- |