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Table 2 Examples of lineage-unique LSE families in representative Vibrionaceae genomes. The number in parenthesis shows the number of lineage-unique LSE families in each genome

From: Genomic and systems evolution in Vibrionaceae species

Strain

Function description

No. genes in families

V. cholerae O395 (49)

DNA circulation protein

2

 

DNA transposition protein

2

 

Tail tube protein

2

 

Phage virion morphogenesis protein

2

 

gp27/gp16/gp05

6

V. parahaemolyticus RIMD 2210633 (24)

Type 1 pili subunit CsuA/B protein

2

 

Dienelactone hydrolase domain protein

2

 

Site-specific recombinase

2

V. vulnificus CMCP6 (16)

Permease of the major facilitator superfamily

2

 

Transposase

2

 

Cation transport ATPase

2

 

Cobalamin biosynthesis protein CobW

2

V. vulnificus YJ016 (11)

4-hydroxyphenylacetate degradation bifunctionalisomerase

2

 

CRISPR-associated protein

4

V. splendidus LGP32 (13)

Transposase of insertion sequence ISVisp4

18

 

Protein sufB

2

 

Sensory box histidine kinase/response regulator

2

A. fischeri MJ11 (10)

Response regulator receiver protein

2

 

Acetyltransferase

3

A. fischeri ES114 (3)

Anaerobic glycerol-3-phosphate dehydrogenase subunit C (RebB)

9

A. salmonicida LFI1238 (12)

DNA-binding protein HU-alpha

2

 

Phage replication repressor RstR

2

 

Shufflon-specific DNA recombinase

2

 

Transposase of insertion sequence families

102

P. profundum SS9 (90)

Selenoprotein A of glycine-reductase

2

 

NosR, Regulator of nitric oxide reductase transcription

2

 

Acetolactate synthase, iolD

2

 

Myo-inositol catabolismprotein iolB

2

 

Anaerobic dicarboxylate transporter

2

 

Alpha-galactosidase (melibiase)

2

 

Protease/scaffold protein

2

 

Sodium: dicarboxylate symporter

3

 

Methyl-accepting chemotaxis protein

3

 

Reverse transcriptase/maturase family protein

3

 

Helix-turn-helix XRE-family like proteins

8

 

Transposase

36

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BMC Genomics

ISSN: 1471-2164

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