From: Word-based characterization of promoters involved in human DNA repair pathways
(a) Bidirectional | |||||
---|---|---|---|---|---|
Sequence | Transcription Factor (Matrix Ida) | Sequence (bottom) aligned to matrix consensusb | Matchesc | Avg. Scored | Score Rangee |
TCGCGCCA | PF0112f | KTGGCGGGAA  TGGCGCGA | 4/6 | 89.0 | 86.5–96.8 |
TCCCGGGA | STAT5A | TTCYNRGAA TCCCGGGA | 8/16 | 86.7 | 86.7–86.7 |
GGCCCGCC | SP1 (V$SP1_01) | DRGGCRKGSW   GGCGGGCC | 8/13 | 90.2 | 86.5–90.8 |
TCCCGGCT | ELK1 (MA0028) | NNNMCGGAAR  AGCCGGGA | 3/6 | 86.9 | 86.5–87.7 |
CAGGGGCC | V$WT1_Q6 | SVCHCCBVC GGCCCCTG | 5/6 | 87.4 | 85.0–91.1 |
AGGGCCGT | MYB (V$MYB_Q3) | NNNBNCMGTTN  AGGGCCGT  | 2/7 | 91.2 | 89.8–92.6 |
TCTGAGGA | TFIIA (V$TFIIA_Q6) | TMTDHRAGGRVS   TCTGAGGA  | 2/8 | 88.1 | 85.8–90.5 |
CGTGGGGG | E2F (V$E2F1_Q3) |   BKTSSCGS CGTGGGGG  | 6/6 | 87.3 | 87.3–87.3 |
TGCTGAGA | No match. | Â | Â | Â | Â |
CGCGGCCG | No match. | Â | Â | Â | Â |
(b) Unidirectional | |||||
Sequence | Transcription Factor (Matrix Ida) | Sequence (bottom) aligned to matrix consensusb | Matchesc | Avg. Scored | Score Rangee |
ACCCGCCT | SP1 (V$SP1_01) | DRGGCRKGSW  AGGCGGGT | 4/7 | 86.2 | 85.9–87.3 |
CTTCTTTC | No match. | Â | Â | Â | Â |
AGGAAACA | NFAT (V$NFAT_Q4_01) | NWGGAAANWB  AGGAAACA | 5/5 | 87.3 | 85.8–88.1 |
GCAGGGCG | PF0096f | YGCANTGCR  GCAGGGCG | 10/10 | 86.8 | 86.5–87.1 |
GGGGCTGC | LRF (V$LRF_Q2) |  VDVRMCCCC GCAGCCCC  | 5/8 | 85.4 | 85.4–85.4 |
TCTTCTTC | No match. | Â | Â | Â | Â |
GGGGAGTA | FOXC1 (MA0032) | NNNVNGTA GGGGAGTA | 4/4 | 95.5 | 95.5–95.5 |
ATTAAAAT | OCT1 ($OCT1_06) | MWNMWTKWSATRYN    ATTTTAAT   | 4/9 | 86.9 | 86.5–87.5 |
CGGAAACC | AREB6 (V$AREB6_04) | VBGTTTSNN  GGTTTCCG | 3/3 | 92.2 | 88.3–95.8 |
TGGGCGGA | GC (V$GC_01) | NNDGGGYGGRGYBD   TGGGCGGA    | 4/5 | 90.3 | 85.1–95.2 |