From: Word-based characterization of promoters involved in human DNA repair pathways
(a) Rank 1 | ||||||||
---|---|---|---|---|---|---|---|---|
Word | S | ES | O | EO | Sln(S/ES) | RevComp. | Position | Palindrome |
ACCCGCCT | 4 | 0.716577 | 4 | 0.727273 | 6.87826 | AGGCGGGT | 19440 | No |
ATCCGCCT | 1 | 0.132296 | 1 | 0.133333 | 2.02271 | AGGCGGAT | NA | No |
ACCAGCCT | 2 | 0.738772 | 2 | 0.75 | 1.99183 | AGGCTGGT | 1303 | No |
AGCCGCCT | 1 | 0.657331 | 1 | 0.666667 | 0.419567 | AGGCGGCT | 1056 | No |
ACCCACCT | 1 | 0.738772 | 1 | 0.75 | 0.302766 | AGGTGGGT | NA | No |
ACGCGCCT | 1 | 1.16147 | 1 | 1.18519 | -0.14969 | AGGCGCGT | NA | No |
CCCCGCCT | 1 | 2.45503 | 2 | 2.54545 | -0.89814 | AGGCGGGG | 21912 | No |
(b) Rank 2 | ||||||||
Word | S | ES | O | EO | Sln(S/ES) | RevComp. | Position | Palindrome |
CTTCTTTC | 5 | 1.7686 | 5 | 1.81818 | 5.19624 | GAAAGAAG | 13567 | No |
CTACTTTC | 1 | 0.180301 | 1 | 0.181818 | 1.71313 | GAAAGTAG | NA | No |
CTTCTTCC | 1 | 0.304671 | 1 | 0.307692 | 1.18852 | GGAAGAAG | 5306 | No |
CTGCTTTC | 2 | 1.15305 | 2 | 1.17647 | 1.10147 | GAAAGCAG | 9703 | No |
CGTCTTTC | 1 | 0.371023 | 1 | 0.375 | 0.991491 | GAAAGACG | 20167 | No |
CTCCTTTC | 3 | 2.36561 | 3 | 2.45 | 0.712729 | GAAAGGAG | 11346 | No |
CTTCTATC | 1 | 0.607134 | 1 | 0.615385 | 0.499005 | GATAGAAG | NA | No |
CTTCCTTC | 1 | 0.921427 | 1 | 0.9375 | 0.0818318 | GAAGGAAG | 10908 | No |
GTTCTTTC | 1 | 1.07027 | 1 | 1.09091 | -0.067912 | GAAAGAAC | 17502 | No |
CTTTTTTC | 1 | 1.2055 | 1 | 1.23077 | -0.186894 | GAAAAAAG | NA | No |
TTTCTTTC | 2 | 3.4628 | 2 | 3.63636 | -1.09786 | GAAAGAAA | NA | No |