Table 8 Word co-occurrence. The top 25 word pairs for the bidirectional (a) and unidirectional (b) promoter set. The word pairs are sorted in descending order by S*ln(S/ES) score.
From: Word-based characterization of promoters involved in human DNA repair pathways
(a) Bidirectional | |||||||||
|---|---|---|---|---|---|---|---|---|---|
(a) Bidirectional | (b) Unidirectional | ||||||||
Word 1 | Word 2 | S | ES | Sln(S/ES) | Word 1 | Word 2 | S | ES | Sln(S/ES) |
TCTGAGGA | TCGCGCCA | 3 | 0.0529 | 12.1158 | GTTCATTC | TCCGCCGG | 2 | 0.0073 | 11.2184 |
ACTCCAGC | TCGCGCCA | 3 | 0.0580 | 11.8387 | CTGTGTGC | TGCGCCGA | 2 | 0.0074 | 11.1966 |
GCCCAGCC | TCCGCCGC | 3 | 0.0722 | 11.1827 | TGACGCGA | CTCCCGCT | 2 | 0.0082 | 10.9997 |
GCCCAGCC | CGGAGCGC | 2 | 0.0087 | 10.8711 | AGCCGGCT | GGGGAGTA | 2 | 0.0131 | 10.0590 |
TGCCCGCG | TCCCGGGA | 4 | 0.2729 | 10.7404 | ATTGCAGG | ATTCTCTC | 2 | 0.0169 | 9.5459 |
GGCAGGGA | GGGCCAGG | 4 | 0.3400 | 9.8609 | GGGGAGTA | AGGAAACA | 2 | 0.0190 | 9.3177 |
TCCCGGGA | TCGCGCCA | 3 | 0.1140 | 9.8112 | CTGGGAGC | GTTCATTC | 2 | 0.0218 | 9.0337 |
AGCCTGTC | TCCCGGGA | 3 | 0.1158 | 9.7646 | CCTTCCGA | CTGGGAGC | 2 | 0.0240 | 8.8439 |
GGAGGCTG | TCGCGCCA | 3 | 0.1173 | 9.7250 | TGGGCGGA | ACCCGCCT | 2 | 0.0247 | 8.7895 |
TCCGCCGC | GCCCCTCC | 4 | 0.3554 | 9.6830 | TTTCTCCA | CGGAAACC | 2 | 0.0265 | 8.6446 |
AGAAAAGA | TCGCGCCA | 2 | 0.0182 | 9.4042 | CCCCCGCG | ACCCGCCT | 2 | 0.0280 | 8.5339 |
GCCCAGCC | GCCCCTCC | 3 | 0.1360 | 9.2808 | TCCGCCGG | GGGGCTGC | 2 | 0.0415 | 7.7522 |
TGCCAAAA | GCCGGCGA | 2 | 0.0195 | 9.2604 | AGCTGGCT | CCAGGCTG | 2 | 0.0422 | 7.7192 |
CAGCAGCC | TGCGGAAT | 2 | 0.0208 | 9.1297 | TTGGTCTC | AGGAAACA | 2 | 0.0446 | 7.6068 |
AGGGCCGT | TCCCGGCT | 3 | 0.1433 | 9.1249 | CTGGGAGC | TCCGCCGG | 2 | 0.0519 | 7.3020 |
CCTCCAGA | TTCCACCC | 2 | 0.0216 | 9.0521 | CTTTTCTC | GCGCCGCG | 2 | 0.0545 | 7.2046 |
CGAGGAGA | TCGCGCCA | 2 | 0.0220 | 9.0204 | ATTGCAGG | ATTAAAAT | 2 | 0.0585 | 7.0639 |
TCCGCCGC | CGGAGCGC | 2 | 0.0228 | 8.9501 | TGGAACCC | GCAGGGCG | 2 | 0.0645 | 6.8693 |
ACCCTCGT | AGGGAGGG | 2 | 0.0253 | 8.7380 | GGGCAGGC | AGCTGGCT | 2 | 0.0657 | 6.8326 |
GCCCAGCC | TCCACTGT | 2 | 0.0254 | 8.7315 | TTGGTCTC | CTTCTTTC | 2 | 0.0676 | 6.7745 |
CAGCAGCC | AGGGCCGT | 3 | 0.1705 | 8.6024 | CTTTTTCA | CGCCCCTT | 2 | 0.0684 | 6.7522 |
TGCCCGCG | TCCCGGCT | 3 | 0.1747 | 8.5291 | GCAGGGCG | AGGAAACA | 2 | 0.0766 | 6.5251 |
CCCAGGAC | AGAGAGCT | 2 | 0.0291 | 8.4590 | GGGCAGGC | TTTCTCCA | 2 | 0.0939 | 6.1181 |
TCTGGGAT | GGCCCGCC | 2 | 0.0329 | 8.2123 | CTGGGAGC | TCTCCCCT | 2 | 0.0947 | 6.0996 |
AGCCGGGC | AGAAAAGA | 2 | 0.0333 | 8.1930 | AGCAGGGC | GGCTTTTA | 2 | 0.0956 | 6.0805 |