Table 2 Performance of the binding site prediction in terms of secondary structure elements
From: DNA-binding residues and binding mode prediction with binding-mechanism concerned models
Binding type | Secondary structure elements | # of residues | TP | FP | TN | FP | Sensitivity | Specificity | Precision | Accuracy |
|---|---|---|---|---|---|---|---|---|---|---|
Specific | Helix | 32670 | 1322 | 279 | 30160 | 909 | 59.26% | 99.08% | 82.57% | 96.36% |
| Â | Sheet | 5259 | 22 | 0 | 5077 | 160 | 12.09% | 100.00% | 100.00% | 96.96% |
| Â | Coil | 22537 | 420 | 116 | 21316 | 685 | 38.01% | 99.46% | 78.36% | 96.45% |
Non-specific | Helix | 32670 | 2197 | 1005 | 27458 | 2010 | 52.22% | 96.47% | 66.61% | 90.77% |
| Â | Sheet | 5259 | 257 | 185 | 4524 | 293 | 46.73% | 96.07% | 58.15% | 90.91% |
| Â | Coil | 22537 | 2198 | 1264 | 17263 | 1812 | 54.81% | 93.18% | 63.49% | 86.35% |
Specific + Non-specific | Helix | 32670 | 2988 | 858 | 26783 | 2041 | 59.42% | 96.90% | 77.69% | 91.13% |
| Â | Sheet | 5259 | 261 | 181 | 4472 | 345 | 43.07% | 96.11% | 59.05% | 90.00% |
| Â | Coil | 22537 | 2402 | 1167 | 17066 | 1902 | 55/81% | 93.60% | 67.305 | 86.38% |