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Table 7 Illustration of feature set for protein-DNA binding mode prediction

From: DNA-binding residues and binding mode prediction with binding-mechanism concerned models

Feature title

Feature descriptions

Class label

5 protein-DNA binding modes

 

   1. zipper-type

 

   2. helix-turn-helix (HTH)

 

   3. zinc-coordinating

 

   4. β-hairpin/ribbon

 

   5. others

Non-specific binding

20 dimensions of amino acid

 

3 dimensions of secondary structure elements

 

# of binding residues

Protein chain information

3 dimensions of secondary structure elements

 

# of total residues in a protein chain