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Table 1 BLAST outputs of Paragonimus ITS sequence motifs against NCBI GenBank database (nr db)

From: Phylogenetic reconstruction using secondary structures and sequence motifs of ITS2 rDNA of Paragonimus westermani (Kerbert, 1878) Braun, 1899 (Digenea: Paragonimidae) and related species

Species motif patterns (5'-3' ends)

Length (bp)

No. of best hits

Identity

(%)

E-value

>Pattern1

G-G-C-C-A-C-G-G-G-T-T-A-G-C-C-T-G-T-G-G-C-C-A-C-G-C-C-T-G-T-C-C-G-A-G-G-G-T-C-G-G-C-T-T-A-T-A-A-A-C

50

100

100

8e-19

>Pattern2

C-G-G-C-C-A-C-G-G-G-T-T-A-G-C-C-T-G-T-G-G-C-C-A-C-G-C-C-T-G-T-C-C-G-A-G-G-G-T-C-G-G-C-T-T-A-T-A-A-A

50

100

100

8e-19

>Pattern3

G-C-G-G-C-C-A-C-G-G-G-T-T-A-G-C-C-T-G-T-G-G-C-C-A-C-G-C-C-T-G-T-C-C-G-A-G-G-G-T-C-G-G-C-T-T-A-T-A-A

50

100

100

8e-19

>Pattern4

T-G-C-G-G-C-C-A-C-G-G-G-T-T-A-G-C-C-T-G-T-G-G-C-C-A-C-G-C-C-T-G-T-C-C-G-A-G-G-G-T-C-G-G-C-T-T-A-T-A

50

100

100

8e-19

>Pattern5

T-T-G-C-G-G-C-C-A-C-G-G-G-T-T-A-G-C-C-T-G-T-G-G-C-C-A-C-G-C-C-T-G-T-C-C-G-A-G-G-G-T-C-G-G-C-T-T-A-T

50

100

100

8e-19

>Pattern6

A-T-T-G-C-G-G-C-C-A-C-G-G-G-T-T-A-G-C-C-T-G-T-G-G-C-C-A-C-G-C-C-T-G-T-C-C-G-A-G-G-G-T-C-G-G-C-T-T-A

50

100

100

8e-19

>Pattern7

T-A-T-T-G-C-G-G-C-C-A-C-G-G-G-T-T-A-G-C-C-T-G-T-G-G-C-C-A-C-G-C-C-T-G-T-C-C-G-A-G-G-G-T-C-G-G-C-T-T

50

100

100

8e-19

>Pattern8

A-T-A-T-T-G-C-G-G-C-C-A-C-G-G-G-T-T-A-G-C-C-T-G-T-G-G-C-C-A-C-G-C-C-T-G-T-C-C-G-A-G-G-G-T-C-G-G-C-T

50

100

100

8e-19

>Pattern9

C-A-T-A-T-T-G-C-G-G-C-C-A-C-G-G-G-T-T-A-G-C-C-T-G-T-G-G-C-C-A-C-G-C-C-T-G-T-C-C-G-A-G-G-G-T-C-G-G-C

50

100

100

8e-19

>Pattern10

G-C-A-T-A-T-T-G-C-G-G-C-C-A-C-G-G-G-T-T-A-G-C-C-T-G-T-G-G-C-C-A-C-G-C-C-T-G-T-C-C-G-A-G-G-G-T-C-G-G

50

100

100

8e-19