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Table 1 Significant DNA motifs on chromosome III given by WordSpy

From: Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning

 

Well-positioned

Delocalized

Order

Motifs

ZScore

Occur#

Seq#

Motifs

ZScore

Occur#

Seq#

1

TG

12.9

10778

997

TG

6.6

2690

154

2

CA

12.6

11461

997

CAA

10.3

1128

153

3

TTC

17.3

3917

963

TTG

9.8

953

153

4

TGG

15.7

2485

878

GAA

9.4

1064

154

5

GAA

15.5

3822

956

CCA

9.2

735

151

6

CCA

15.4

2728

902

TTC

9.0

967

151

7

CTTC

17.2

1023

581

TGG

7.7

615

148

8

TTTC

15.3

1349

699

TTTG

10.1

350

139

9

TTCT

13.7

1311

675

CTTC

9.4

259

105

10

TTTG

13.4

1247

696

GAAA

8.6

390

135

11

GAAG

13.3

893

554

GAAG

8.0

253

114

12

CCAA

12.5

937

581

TTCT

7.2

321

132

13

AAGA

12.2

1290

645

AAAG

6.7

360

135

14

TGGA

11.5

830

534

AGAA

6.7

362

136

15

AGAA

11.5

1268

665

TCTTC

10.3

111

64

  1. ZScore is computed by using WordSpy.
  2. Occur# is the number of occurrences of the DNA motif in DNA sequences.
  3. Seq# is the number of sequences containing the DNA motif.
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BMC Genomics

ISSN: 1471-2164

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