Table 1 Annotated TRD genes
From: Annotation and classification of the bovine T cell receptor delta genes
Gene designation1 | GLEAN number2 | Scaffold Identification Number | Start | End | Orientation within the scaffold |
|---|---|---|---|---|---|
TRDV1a | GLEAN_22158 | ChrUn.139 | 314906 | 315465 | + |
TRDV1b | GLEAN_22157 | ChrUn.139 | 303549 | 304112 | + |
TRDV1c§§§§§ | GLEAN_22161 | ChrUn.139 | 356577 | 357146 | + |
TRDV1d* | GLEAN_22150 | ChrUn.139 | 75036 | 75601 | - |
TRDV1e* | GLEAN_22151 | ChrUn.139 | 16460 | 17025 | + |
TRDV1f | GLEAN_22162 | ChrUn.139 | 373301 | 373837 | + |
TRDV1g | GLEAN_17632 | ChrUn.298 | 28570 | 29136 | + |
TRDV1h | GLEAN_17646 | ChrUn.298 | 223460 | 224017 | + |
TRDV1i | GLEAN_17645 | ChrUn.298 | 206764 | 207325 | + |
TRDV1j | GLEAN_17648 | ChrUn.298 | 263421 | 263882 | + |
TRDV1k | GLEAN_02242 | ChrUn.1758 | 21943 | 22497 | - |
TRDV1l | GLEAN_02239 | ChrUn.1758 | 58028 | 58581 | - |
TRDV1m | GLEAN_18280 | ChrUn.221 | 6077 | 6638 | - |
TRDV1n | GLEAN_18279 | ChrUn.221 | 30283 | 30837 | - |
TRDV1o**** | GLEAN_18269 | ChrUn.221 | 174860 | 175436 | - |
TRDV1p | NA | ChrUn.221 | 220755 | 221325 | - |
TRDV1q§§§ | GLEAN_18266 | ChrUn.221 | 240734 | 241302 | - |
TRDV1r | GLEAN_18263 | ChrUn.221 | 264437 | 265003 | - |
TRDV1s | GLEAN_05951 | ChrUn.41 | 188111 | 188668 | - |
TRDV1t** | GLEAN_05971 | ChrUn.41 | 313360 | 313923 | + |
TRDV1u | GLEAN_05970 | ChrUn.41 | 294987 | 295550 | + |
TRDV1v*** | GLEAN_05970 | ChrUn.41 | 282485 | 282946 | + |
TRDV1w | GLEAN_05969 | ChrUn.41 | 272858 | 273319 | + |
TRDV1x | GLEAN_05952 | ChrUn.41 | 161524 | 162099 | - |
TRDV1y** | GLEAN_05991 | ChrUn.41 | 661894 | 662457 | + |
TRDV1z | GLEAN_05990 | ChrUn.41 | 642343 | 642906 | + |
TRDV1aa | GLEAN_05984 | ChrUn.41 | 480039 | 480605 | + |
TRDV1ab*** | GLEAN_05989 | ChrUn.41 | 629990 | 630287 | + |
TRDV1ac | GLEAN_16627 | ChrUn.158 | 178923 | 179480 | - |
TRDV1ad | GLEAN_16623 | ChrUn.158 | 237111 | 237679 | - |
TRDV1ae | GLEAN_16625 | ChrUn.158 | 209540 | 210077 | - |
TRDV1af | GLEAN_03708 | ChrUn.129 | 414487 | 415056 | + |
TRDV1ag | GLEAN_03704 | ChrUn.129 | 331405 | 331977 | + |
TRDV1ah | GLEAN_03700 | ChrUn.129 | 300288 | 300855 | + |
TRDV1ai**** | GLEAN_03707 | ChrUn.129 | 390952 | 391528 | + |
TRDV1aj | GLEAN_03683 | ChrUn.129 | 5640 | 6395 | + |
TRDV1alâ—‡ | GLEAN_10351 | ChrUn.857 | 4172 | 4726 | + |
TRDV1am | GLEAN_10353 | ChrUn.857 | 19494 | 20055 | + |
TRDV1an§ | GLEAN_10354 | ChrUn.857 | 28383 | 28939 | + |
TRDV1ao§§ | GLEAN_10356 | ChrUn.857 | 50213 | 50768 | + |
TRDV1ap | GLEAN_10558 | ChrUn.857 | 74024 | 74592 | + |
TRDV1aq | GLEAN_15702 | Chr10.28 | 20379 | 20949 | - |
TRDV1ar◇◇◇◇◇ | GLEAN_15705 | Chr10.28 | 58187 | 58723 | + |
TRDV1as | GLEAN_15706 | Chr10.28 | 84670 | 85131 | + |
TRDV1atâ—‡ | GLEAN_15706 | Chr10.28 | 97187 | 97750 | + |
TRDV1au§ | GLEAN_15708 | Chr10.28 | 115470 | 116026 | + |
TRDV1av§§ | GLEAN_15709 | Chr10.28 | 132846 | 133401 | + |
TRDV1aw§§§§ | GLEAN_15699 | Chr10.28 | 198285 | 198854 | - |
TRDV1ax | GLEAN_15696 | Chr10.28 | 245707 | 246273 | - |
TRDV1ay§§§ | GLEAN_19588 | ChrUn.2578 | 31691 | 32259 | - |
TRDV1az | GLEAN_06130 | ChrUn.1227 | 79925 | 80480 | - |
TRDV1ba | GLEAN_06133 | ChrUn.1227 | 39695 | 40263 | - |
TRDV1bb | GLEAN_06131 | ChrUn.1227 | 62992 | 63563 | - |
TRDV1bc◇◇◇ | GLEAN_26185 | ChrUn.2188 | 10476 | 11031 | + |
TRDV1bd | GLEAN_26186 | ChrUn.2188 | 33687 | 34255 | + |
TRDV1be§§§§ | GLEAN_21863 | ChrUn.5529 | 9610 | 10170 | - |
TRDV1bf§§§§§ | GLEAN_20556 | ChrUn.4913 | 10675 | 11244 | - |
TRDV1bg | GLEAN_05967 | ChrUn.41 | 250250 | 250849 | + |
TRDV1bh | GLEAN_04691 | ChrUn.3566 | 5067 | 5528 | + |
TRDV1biâ—‡ | GLEAN_04693 | ChrUn.3566 | 19054 | 19618 | + |
TRDV1bj◇◇ | GLEAN_10738 | ChrUn.3620 | 538 | 1129 | + |
TRDV1bk◇◇ | GLEAN_12353 | ChrUn.3793 | 3915 | 4506 | + |
TRDV1bl◇◇◇ | GLEAN_22424 | ChrUn.3970 | 9390 | 9945 | + |
TRDV1bm | GLEAN_20555 | ChrUn.10149 | 1843 | 2409 | - |
TRDV1bn◇◇◇◇ | GLEAN_08205 | ChrUn.3458 | 16972 | 17538 | - |
TRDV1bo◇◇◇◇ | GLEAN_19099 | ChrUn.2982 | 15173 | 15739 | + |
TRDV1bp◇◇◇◇◇ | GLEAN_05881 | ChrUn.4123 | 14961 | 15497 | + |
TRDV2-1 | NA | ChrUn.158 | 345140 | 345657 | - |
TRDV2-2¤ | GLEAN_10313 | ChrUn.1907 | 43992 | 44509 | + |
TRDV2-2b¤ | GLEAN_25296 | ChrUn.1948 | 11302 | 11819 | + |
TRDV3-1¤¤ | NA | ChrUn.7503 | 3142 | 3667 | - |
TRDV3-1b¤¤ | GLEAN_19095 | ChrUn.1002 | 77577 | 78102 | + |
TRDV4 | GLEAN_19724 | Chr10.30 | 396663 | 397245 | + |
TRDD1 | NA | Chr10.30 | 504600 | 504612 | - |
TRDD2 | NA | Chr10.30 | 488743 | 488757 | - |
TRDD3 | NA | Chr10.30 | 449660 | 449672 | - |
TRDD4 | NA | Chr10.30 | 441241 | 441249 | - |
TRDD5 | NA | Chr10.30 | 417750 | 417760 | - |
TRDJ1 | NA | Chr10.30 | 416717 | 416770 | - |
TRDJ2 | NA | Chr10.30 | 406656 | 406598 | - |
TRDJ3 | NA | Chr10.30 | 410369 | 410417 | - |
TRDC | GLEAN_19705 | Chr10.30 | 402706 | 403988 | - |