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Table 1 Annotated TRD genes

From: Annotation and classification of the bovine T cell receptor delta genes

Gene designation1 GLEAN number2 Scaffold Identification Number Start End Orientation within the scaffold
TRDV1a GLEAN_22158 ChrUn.139 314906 315465 +
TRDV1b GLEAN_22157 ChrUn.139 303549 304112 +
TRDV1c§§§§§ GLEAN_22161 ChrUn.139 356577 357146 +
TRDV1d* GLEAN_22150 ChrUn.139 75036 75601 -
TRDV1e* GLEAN_22151 ChrUn.139 16460 17025 +
TRDV1f GLEAN_22162 ChrUn.139 373301 373837 +
TRDV1g GLEAN_17632 ChrUn.298 28570 29136 +
TRDV1h GLEAN_17646 ChrUn.298 223460 224017 +
TRDV1i GLEAN_17645 ChrUn.298 206764 207325 +
TRDV1j GLEAN_17648 ChrUn.298 263421 263882 +
TRDV1k GLEAN_02242 ChrUn.1758 21943 22497 -
TRDV1l GLEAN_02239 ChrUn.1758 58028 58581 -
TRDV1m GLEAN_18280 ChrUn.221 6077 6638 -
TRDV1n GLEAN_18279 ChrUn.221 30283 30837 -
TRDV1o**** GLEAN_18269 ChrUn.221 174860 175436 -
TRDV1p NA ChrUn.221 220755 221325 -
TRDV1q§§§ GLEAN_18266 ChrUn.221 240734 241302 -
TRDV1r GLEAN_18263 ChrUn.221 264437 265003 -
TRDV1s GLEAN_05951 ChrUn.41 188111 188668 -
TRDV1t** GLEAN_05971 ChrUn.41 313360 313923 +
TRDV1u GLEAN_05970 ChrUn.41 294987 295550 +
TRDV1v*** GLEAN_05970 ChrUn.41 282485 282946 +
TRDV1w GLEAN_05969 ChrUn.41 272858 273319 +
TRDV1x GLEAN_05952 ChrUn.41 161524 162099 -
TRDV1y** GLEAN_05991 ChrUn.41 661894 662457 +
TRDV1z GLEAN_05990 ChrUn.41 642343 642906 +
TRDV1aa GLEAN_05984 ChrUn.41 480039 480605 +
TRDV1ab*** GLEAN_05989 ChrUn.41 629990 630287 +
TRDV1ac GLEAN_16627 ChrUn.158 178923 179480 -
TRDV1ad GLEAN_16623 ChrUn.158 237111 237679 -
TRDV1ae GLEAN_16625 ChrUn.158 209540 210077 -
TRDV1af GLEAN_03708 ChrUn.129 414487 415056 +
TRDV1ag GLEAN_03704 ChrUn.129 331405 331977 +
TRDV1ah GLEAN_03700 ChrUn.129 300288 300855 +
TRDV1ai**** GLEAN_03707 ChrUn.129 390952 391528 +
TRDV1aj GLEAN_03683 ChrUn.129 5640 6395 +
TRDV1al GLEAN_10351 ChrUn.857 4172 4726 +
TRDV1am GLEAN_10353 ChrUn.857 19494 20055 +
TRDV1an§ GLEAN_10354 ChrUn.857 28383 28939 +
TRDV1ao§§ GLEAN_10356 ChrUn.857 50213 50768 +
TRDV1ap GLEAN_10558 ChrUn.857 74024 74592 +
TRDV1aq GLEAN_15702 Chr10.28 20379 20949 -
TRDV1ar GLEAN_15705 Chr10.28 58187 58723 +
TRDV1as GLEAN_15706 Chr10.28 84670 85131 +
TRDV1at GLEAN_15706 Chr10.28 97187 97750 +
TRDV1au§ GLEAN_15708 Chr10.28 115470 116026 +
TRDV1av§§ GLEAN_15709 Chr10.28 132846 133401 +
TRDV1aw§§§§ GLEAN_15699 Chr10.28 198285 198854 -
TRDV1ax GLEAN_15696 Chr10.28 245707 246273 -
TRDV1ay§§§ GLEAN_19588 ChrUn.2578 31691 32259 -
TRDV1az GLEAN_06130 ChrUn.1227 79925 80480 -
TRDV1ba GLEAN_06133 ChrUn.1227 39695 40263 -
TRDV1bb GLEAN_06131 ChrUn.1227 62992 63563 -
TRDV1bc GLEAN_26185 ChrUn.2188 10476 11031 +
TRDV1bd GLEAN_26186 ChrUn.2188 33687 34255 +
TRDV1be§§§§ GLEAN_21863 ChrUn.5529 9610 10170 -
TRDV1bf§§§§§ GLEAN_20556 ChrUn.4913 10675 11244 -
TRDV1bg GLEAN_05967 ChrUn.41 250250 250849 +
TRDV1bh GLEAN_04691 ChrUn.3566 5067 5528 +
TRDV1bi GLEAN_04693 ChrUn.3566 19054 19618 +
TRDV1bj GLEAN_10738 ChrUn.3620 538 1129 +
TRDV1bk GLEAN_12353 ChrUn.3793 3915 4506 +
TRDV1bl GLEAN_22424 ChrUn.3970 9390 9945 +
TRDV1bm GLEAN_20555 ChrUn.10149 1843 2409 -
TRDV1bn GLEAN_08205 ChrUn.3458 16972 17538 -
TRDV1bo GLEAN_19099 ChrUn.2982 15173 15739 +
TRDV1bp GLEAN_05881 ChrUn.4123 14961 15497 +
TRDV2-1 NA ChrUn.158 345140 345657 -
TRDV2-2¤ GLEAN_10313 ChrUn.1907 43992 44509 +
TRDV2-2b¤ GLEAN_25296 ChrUn.1948 11302 11819 +
TRDV3-1¤¤ NA ChrUn.7503 3142 3667 -
TRDV3-1b¤¤ GLEAN_19095 ChrUn.1002 77577 78102 +
TRDV4 GLEAN_19724 Chr10.30 396663 397245 +
TRDD1 NA Chr10.30 504600 504612 -
TRDD2 NA Chr10.30 488743 488757 -
TRDD3 NA Chr10.30 449660 449672 -
TRDD4 NA Chr10.30 441241 441249 -
TRDD5 NA Chr10.30 417750 417760 -
TRDJ1 NA Chr10.30 416717 416770 -
TRDJ2 NA Chr10.30 406656 406598 -
TRDJ3 NA Chr10.30 410369 410417 -
TRDC GLEAN_19705 Chr10.30 402706 403988 -
  1. 1Gene designations with the same symbols denote gene models that are thought to be representative of the same gene based on analysis of genomic sequence.
  2. 2NA denotes identified genes lacking glean models.