Table 5 Classification of bovine TRDV1 cDNA sequences
From: Annotation and classification of the bovine T cell receptor delta genes
cDNA clone name | Accession number1 | Provisional IMGT nomenclature2 | Closest germline gene found in this study3 | Number of nucleotide differences4 | TRDV set |
|---|---|---|---|---|---|
Vdelta1.36 | EF175175 | NN | TRDV1l | 5 | 1 |
BVd1.26 | U73393 | TRDV1S11 | TRDV1m | 6 | 1 |
SB-C11 | FJ907530 | NN | TRDV1af | 1 | 1 |
SB-C17 | - | NN | TRDV1af | 1 | 1 |
BTDV27 | D16114 | TRDV1S14 | TRDV1af | 4 | 1 |
BVd1.13 | U73380 | TRDV1S15 | TRDV1a | 2 | 1 |
BTDV2 | D13656 | TRDV1S18 | TRDV1a | 2 | 1 |
SB-B1 | FJ907521 | NN | TRDV1a | 5 | 1 |
SB-C25 | FJ907532 | NN | TRDV1a | 5 | 1 |
SB-C3 | - | NN | TRDV1a | 4 | 1 |
BTDV4 | D13660 | TRDV1S13 | TRDV1h | 1 | 1 |
SB-A5 | FJ907519 | NN | TRDV1h | 6 | 1 |
SB-C1 | FJ907526 | NN | TRDV1h | 1 | 1 |
SB-C15 | - | NN | TRDV1h | 1 | 1 |
SB-A11 | FJ907520 | NN | TRDV1h | 2 | 1 |
SB-C23 | - | NN | TRDV1h | 1 | 1 |
SB-B7 | FJ907524 | NN | TRDV1b | 5 | 1 |
BVd1.23 | U73390 | TRDV1S4 | TRDV1b | 0 | 1 |
SB-C7 | FJ907528 | NN | ND | NA | 1 |
BTDV1 | D16116 | TRDV1S6 | ND | NA | 1 |
BTDV1 | D13655 | TRDV1S15 | ND | NA | 1 |
BVd1.14 | U73381 | TRDV1S7 | ND | NA | 1 |
SB-B6 | FJ907523 | NN | ND | NA | 1 |
BTDV8 | D16112 | TRDV1S12 | ND | NA | 1 |
SB-A7 | - | NN | ND | NA | 1 |
SB-B11 | FJ907525 | NN | ND | NA | 1 |
BTDV33 | D13658 | TRDV1S1 | ND | NA | 1 |
SB-C19 | - | NN | ND | NA | 1 |
BTDV3 | D13657 | TRDV1S16 | ND | NA | 1 |
SB-B3 | FJ907522 | NN | ND | NA | 1 |
BTDV28 | D16115 | TRDV1S17 | ND | NA | 1 |
BVd1.24 | U73391 | TRDV1S2 | ND | NA | 1 |
SB-C9 | FJ907529 | NN | TRDV1an | 2 | 2 |
BVd1.16 | U73383 | TRDV1S9 | TRDV1an | 1 | 2 |
BVd1.18 | U73385 | TRDV1S10 | TRDV1an | 5 | 2 |
BVd1.15 | U73382 | TRDV1S3 | TRDV1am | 0 | 2 |
SB-C5 | FJ907527 | NN | TRDV1az5 | 4 | 2 |
SB-C13 | - | NN | TRDV1az5 | 4 | 2 |
SB-A3 | - | NN | TRDV1az | 1 | 2 |
BVd1.17 | U73384 | TRDV1S8 | TRDV1az | 1 | 2 |
SB-A9 | - | NN | TRDV1az | 2 | 2 |
SB-B9 | - | NN | TRDV1az5 | 4 | 2 |
BVd1.21 | U73388 | TRDV1S23 | TRDV1ax | 1 | 3 |
BVd1.20 | U73387 | TRDV1S22 | TRDV1aa | 2 | 3 |
BTDV6 | D13661 | TRDV1S24 | TRDV1r | 1 | 3 |
Vdelta1.37 | EF175176 | NN | TRDV1aq | 46 | 4 |
Vdelta1.33 | EF175171 | NN | ND | NA | 5 |
BTDV26 | D16113 | TRDV1S25 | ND | NA | 5 |
BVd1.22 | U73389 | TRDV1S21 | ND | NA | 5 |
BVd1.25 | U73392 | TRDV1S5 | ND | NA | 7 |
Vdelta1.34 | EF175172 | NN | ND | NA | 7 |
BVd1.19 | U73386 | TRDV1S20 | TRDV1ad | 1 | 8 |
Vdelta1.35 | EF175173 | NN | TRDV1ae | 0 | 9 |
SB-C21 | FJ907531 | NN | TRDV1u | 5 | 10 |
BTDV36 | D13659 | TRDV1S19 | ND | NA | 11 |