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Table 5 Classification of bovine TRDV1 cDNA sequences

From: Annotation and classification of the bovine T cell receptor delta genes

cDNA clone name Accession number1 Provisional IMGT nomenclature2 Closest germline gene found in this study3 Number of nucleotide differences4 TRDV set
Vdelta1.36 EF175175 NN TRDV1l 5 1
BVd1.26 U73393 TRDV1S11 TRDV1m 6 1
SB-C11 FJ907530 NN TRDV1af 1 1
SB-C17 - NN TRDV1af 1 1
BTDV27 D16114 TRDV1S14 TRDV1af 4 1
BVd1.13 U73380 TRDV1S15 TRDV1a 2 1
BTDV2 D13656 TRDV1S18 TRDV1a 2 1
SB-B1 FJ907521 NN TRDV1a 5 1
SB-C25 FJ907532 NN TRDV1a 5 1
SB-C3 - NN TRDV1a 4 1
BTDV4 D13660 TRDV1S13 TRDV1h 1 1
SB-A5 FJ907519 NN TRDV1h 6 1
SB-C1 FJ907526 NN TRDV1h 1 1
SB-C15 - NN TRDV1h 1 1
SB-A11 FJ907520 NN TRDV1h 2 1
SB-C23 - NN TRDV1h 1 1
SB-B7 FJ907524 NN TRDV1b 5 1
BVd1.23 U73390 TRDV1S4 TRDV1b 0 1
SB-C7 FJ907528 NN ND NA 1
BTDV1 D16116 TRDV1S6 ND NA 1
BTDV1 D13655 TRDV1S15 ND NA 1
BVd1.14 U73381 TRDV1S7 ND NA 1
SB-B6 FJ907523 NN ND NA 1
BTDV8 D16112 TRDV1S12 ND NA 1
SB-A7 - NN ND NA 1
SB-B11 FJ907525 NN ND NA 1
BTDV33 D13658 TRDV1S1 ND NA 1
SB-C19 - NN ND NA 1
BTDV3 D13657 TRDV1S16 ND NA 1
SB-B3 FJ907522 NN ND NA 1
BTDV28 D16115 TRDV1S17 ND NA 1
BVd1.24 U73391 TRDV1S2 ND NA 1
SB-C9 FJ907529 NN TRDV1an 2 2
BVd1.16 U73383 TRDV1S9 TRDV1an 1 2
BVd1.18 U73385 TRDV1S10 TRDV1an 5 2
BVd1.15 U73382 TRDV1S3 TRDV1am 0 2
SB-C5 FJ907527 NN TRDV1az5 4 2
SB-C13 - NN TRDV1az5 4 2
SB-A3 - NN TRDV1az 1 2
BVd1.17 U73384 TRDV1S8 TRDV1az 1 2
SB-A9 - NN TRDV1az 2 2
SB-B9 - NN TRDV1az5 4 2
BVd1.21 U73388 TRDV1S23 TRDV1ax 1 3
BVd1.20 U73387 TRDV1S22 TRDV1aa 2 3
BTDV6 D13661 TRDV1S24 TRDV1r 1 3
Vdelta1.37 EF175176 NN TRDV1aq 46 4
Vdelta1.33 EF175171 NN ND NA 5
BTDV26 D16113 TRDV1S25 ND NA 5
BVd1.22 U73389 TRDV1S21 ND NA 5
BVd1.25 U73392 TRDV1S5 ND NA 7
Vdelta1.34 EF175172 NN ND NA 7
BVd1.19 U73386 TRDV1S20 TRDV1ad 1 8
Vdelta1.35 EF175173 NN TRDV1ae 0 9
SB-C21 FJ907531 NN TRDV1u 5 10
BTDV36 D13659 TRDV1S19 ND NA 11
  1. 1A dash indicates redundant sequence for which a GenBank accession number was not obtained.
  2. 2NN indicates sequence for which no Provisional Nomenclature exists.
  3. 3ND indicates cDNA sequences for which no corresponding gene could be identified in this study.
  4. 4Number of nucleotides that are different between the Provisional IMGT Nomenclature and the corresponding gene sequences between amino acid positions 1 and 104 (2nd-CYS); NA indicates sequence that lacks corresponding gene.
  5. 5Genes listed as corresponding are the closest matches; however, classification of these genes was unclear.
  6. 6cDNA sequence used for comparison was partial.