Table 1 List of prediction programs used in FSD
From: Fungal Secretome Database: Integrated platform for annotation of fungal secretomes
Prediction Program | Description | Ref |
|---|---|---|
SignalP 3.0 | A program to predict whether a protein has the signal peptidase site I or not | [17] |
SigCleave | A program to predict whether a protein has signal peptides or not | [19] |
SigPred | A program to predict whether a protein has signal peptides or not | [20] |
RPSP | A program to predict whether a protein has signal peptides or not | [21] |
TMHMM 2.0c | A program to predict whether a protein has trans-membrane helix(es) or not | [26] |
TargetP 1.1b | A program to predict a site where a protein probably resides | [23] |
PSort II | A program to predict a site where a protein probably resides | [22] |
SecretomeP 1.0f | A program to predict whether a protein is secreted by non-classical pathways or not | [25] |
predictNLS | A program to predict whether a protein has nuclear localization signal or not | [28] |