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Table 3 Class definitions used in FSD

From: Fungal Secretome Database: Integrated platform for annotation of fungal secretomes

Class

Description*

Class SP

Proteins which are predicted by SignalP 3.0

Class SP3

Proteins which are predicted by SigPred, SigCleave, or RPSP

Class SL

Proteins which are predicted by PSort II or TargetP 1.1b, but are not predicted by SignalP 3.0, SigPred, SigCleave, RPSP, or SecretomeP 1.0f

Class NS

Proteins which are predicted by SecretomeP 1.0f, but are not predicted by SignalP 3.0, SigPred, SigCleave, or RPSP

  1. * Proteins as follows were removed from all four classes described in this table: proteins which i) contain more than one trans-membrane helixes, ii) have ER retention signals, iii) predicted as mitochondrial proteins by PSort II and TargetP 1.1b, and iv) predicted as nuclear proteins by TargetP 1.1b and predictNLS.