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Table 3 Splice site strength for prevalent and non-prevalent splice forms.

From: Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii

AS event

non-prevalent vs prevalent

prevalent vs constitutive

 

non-prevalent avg. score

p -value

prevalent avg. score

prevalent avg. score

p -value

constitutive avg. score

Alt5'

5.88

1.98e-07

8.14

7.51

1.67e-07

8.85

Alt3'

4.17

2.30e-12

6.73

6.31

6.95e-18

7.57

  1. Splice site scores and p-values for the 5' and 3' sites of prevalent and non-prevalent splice forms. The table shows data that support two hypotheses: (i) non-prevalent splice sites are weaker than splice sites associated with the prevalent splice form; (ii) prevalent splice sites are weaker than splice sites associated with constitutive splicing. The "avg. score" columns provide the average score of splice site occurrences. For the comparison of non-prevalent with prevalent splice forms, the scores are computed with respect to a motif model of prevalent instances; for the comparison of prevalent and constitutive splicing the scores are computed with respect to a model of the constitutive splice sites.
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BMC Genomics

ISSN: 1471-2164

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