Skip to main content

Table 3 Single nucleotide polymorphisms (SNPs) identified within chromosomal sequences of isolate 08-5923 relative to 08-5578.

From: High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak

SNP position

CDS/Intergenic

gene

08-5578 sequence

08-5923 sequence

08-5578 codon

08-5923 codon

08-5578 residue

08-5923 residue

Predicted Product

47737

non-synonymous

 

T

C

ATA

ACA

I

T

hypothetical protein

113283

non-synonymous

 

(G)

(A)

(GAT)

(AAT)

D

N

ATP-binding cassette, subfamily B

172841

synonymous

yaaQ

A

G

CCA

CCG

P

P

hypothetical protein

213957

non-synonymous

fusA

T

A

TTC

TAC

F

Y

elongation factor G

291652

non-synonymous

cytR

T

G

AGT

AGG

S

R

transcriptional regulator, LacI family

291653

non-synonymous

cytR

G

T

GTG

TTG

V

L

transcriptional regulator, LacI family

552482

non-synonymous

hsdR

C

G

TGC

TGG

C

W

type I restriction enzyme, R subunit

577443

non-synonymous

celF

A

G

GAC

GGC

D

G

6-phospho-beta-glucosidase

630182

non-synonymous

 

C

A

ACA

AAA

T

K

hypothetical protein

833717

non-synonymous

araR

(A)

(T)

(AAC)

(TAC)

N

Y

arabinose operon transcriptional repressor

850721

intergenic

 

G

C

     

940888

non-synonymous

pgcA

A

G

GAA

GGA

E

G

phosphomannomutase

1076779

synonymous

ykuQ

C

T

TTC

TTT

F

F

Tetrahydrodipicolinate N-succinyltransferase

1096500

non-synonymous

 

A

T

ATA

TTA

I

L

hypothetical protein

1319530

non-synonymous

 

T

G

TGT

GGT

C

G

hypothetical protein

1462121

non-synonymous

pta2

C

T

GCT

GTT

A

V

phosphate butyryltransferase

1660409

synonymous

hemL

(C)

(G)

(CGC)

(CGG)

R

R

glutamate-1-semialdehyde aminotransferase

1787404

non-synonymous

 

T

A

TTT

TTA

F

L

hypothetical protein

1901622

non-synonymous

 

(T)

(C)

(GTA)

(GCA)

V

A

sigma-54 dependent transcriptional regulator

1910870

non-synonymous

 

(C)

(G)

(CGC)

(GGC)

R

G

hypothetical protein

2117257

non-synonymous

aroA

(T)

(G)

(GTC)

(GGC)

V

G

3-phosphoshikimate 1-carboxyvinyltransferase

2124375

non-synonymous

hepT

(C)

(T)

(GCA)

(GTA)

A

V

trans-hexaprenyltranstransferase

2146277

non-synonymous

punA

(A)

(G)

(ATA)

(GTA)

I

V

purine-nucleoside phosphorylase

2261927

intergenic

 

C

A

     

2404315

non-synonymous

 

G

A

AGT

AAT

S

N

hypothetical protein

2603164

synonymous

 

(T)

(G)

(CTT)

(CTG)

L

L

D-methionine transport system ATP-binding protein

2691224

intergenic

 

G

T

     

2929661

synonymous

atpA

(A)

(G)

(TCA)

(TCG)

S

S

F-type H+-transporting ATPase alpha chain

  1. SNP coordinates are in relation to the genome of 08-5578 and the nucleotide composition refers to the positive DNA strand unless the SNP lies within a coding sequence on the negative (complementary) strand, and in these instances are marked in brackets.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us