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Table 2 Estimation of the numbers of species-specific genes.

From: Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis

 

On

Or

Og

Oj

Oi

 

Oj

Oi

Oj

Oi

Oj

Oi

Oi

Oj

d

1.57 × 10-4

1.55 × 10-4

1.45 × 10-4

1.37 × 10-4

1.32 × 10-4

L (Mbp)

448

439

354

382

466

r

0.603

0.609

0.690

0.611

0.666

n g

42,356

41,422

35,553

32,000

41,102

n u

1,360

1,105

934

865

1,260

1,456

946

980

h u

1,115

906

531

492

758

876

2,157

1,846

h m

33,614

33,823

23,016

23,055

20,631

20,513

70,794

75,588

  1. d, gene density per site; L, genome size; r, fraction of non-repetitive DNA; n g , total number of genes; n u , number of genes missing in the genomes of Oj or Oi, but preserved in On, Or, or Og; h u , number of unmapped BESs that matched the nr database proteins; h m , number of mapped BESs that matched the nr database proteins. For Oj and Oi, we used simulated BESs.
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BMC Genomics

ISSN: 1471-2164

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