Table 2 Tentatively annotated fast evolving transcript fragments and their sequence divergence as compared to the closest ortholog in the teleost mRNA refseq database and in the Hypostomus gr. plecostomus EST dataset.
From: Transcriptome screen for fast evolving genes by Inter-Specific Selective Hybridization (ISSH)
contig | mRNA refseq annotation according to closest teleost ortholog | Species | Cds/UTR | A.temminckii vs closest teleost ortholog in mRNA refseq | A. temminckii vs H. gr. plecostomus |
|---|---|---|---|---|---|
342 | zgc:175146 | Dr | 3'UTR | 0.4411 | 0.2990 |
435 | interferon regulatory factor 6 (irf6) | Dr | 3'UTR | 0.4824 | 0.3485 |
478 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2 (ndufaf2), nuclear gene encoding mitochondrial protein | Dr | 3'UTR | 0.2680 | 0.2531 |
597 | similar to porcupine homolog (LOC100148644) | Dr | 3'UTR | 0.4824 | 0.3485 |
605 | zgc:158374 | Dr | cds | 0.4411 | 0.2833 |
710 | single-minded homolog 2 (sim2) | Dr | 3'UTR | 0.4411 | 0.3151 |
785 | similar to pol polyprotein (LOC796496) | Dr | cds | 0.3839 | 0.1324 |
809 | similar to ORF1-encoded protein (LOC100004717) | Dr | 5'UTR | 0.4824 | 0.3839 |
1137 | zgc:56382 | Dr | cds | 0.3485 | 0.2680 |
1451 | RMD5 homolog B (rmd5b) | Ss | 5'UTR | 0.5042 | 0.1324 |
1479 | similar to ORF1-encoded protein (LOC100004764) | Dr | 3'UTR | 0.2531 | 0.1573 |
1492 | wu:fc33e05 | Dr | 3'UTR | 0.3151 | 0.2680 |
1565 | hypothetical LOC570897 | Dr | cds | 0.3316 | 0.2385 |
1614 | ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) like (rac1l) | Dr | 3'UTR | 0.2833 | 0.2990 |
1694 | similar to NLR family, pyrin domain containing 3 (LOC100002061) | Dr | 3'UTR | 0.3839 | 0.4024 |
1695 | monoacylglycerol O-acyltransferase 2 | Dr | 3'UTR | 0.3485 | 0.2531 |
1782 | similar to G protein-coupled receptor 128 (LOC100148710) | Dr | cds | 0.3839 | 0.2531 |
1819 | similar to Uromodulin precursor (Tamm-Horsfall urinary glycoprotein) (THP) (LOC100007639) | Dr | cds | 0.4824 | 0.4024 |
1902 | hypothetical protein LOC100150258 | Dr | cds | 0.3839 | 0.1324 |
1905 | si:dkeyp-27b10.2 | Dr | cds | 0.3485 | 0.2531 |
2016 | zgc:64076 | Dr | 3'UTR | 0.2680 | 0.1702 |
2029 | zgc:85811 | Dr | cds | 0.3151 | 0.1833 |
2066 | similar to CG6639 CG6639-PA (LOC100000002) | Dr | cds | 0.4824 | 0.3151 |
2085 | hypothetical protein LOC100149782 | Dr | cds | 0.2990 | 0.2103 |
2225 | zgc:158374 | Dr | cds | 0.4614 | 0.4214 |
2342 | similar to zymogen granule membrane glycoprotein 2 (LOC100005977) | Dr | cds | 0.4614 | 0.4411 |
|  |    Reference fast evolving sequences |  |  | A. brevipinnis vs Danio rerio | A. brevipinnis vs H. boulengeri |
|  |    cytochrome oxidase subunit I (COI) |  | cds | 0.239 | 0.145 |
| Â | Â | Â | Â | A. cirrhosus vs Danio rerio | A. cirrhosus vs H. boulengeri |
|  |    reticulon 4 (RTN4) introns 1 & 2 |  | introns | 0.748 | 0.170 |