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Table 1 Top 50 known genes in TW germinomas.

From: Pediatric primary central nervous system germ cell tumors of different prognosis groups show characteristic miRNome traits and chromosome copy number variations

Probe Set ID UniGene ID Gene Title Gene Symbol Location
207522_s_at Hs.513870 ATPase; Ca++ transporting; ubiquitous ATP2A3 chr17p13.3
1552487_a_at Hs.459153 basonuclin 1 BNC1 chr15q25.2
219928_s_at Hs.511983 calcium binding tyrosine-(Y)-phosphorylation regulated CABYR chr18q11.2
219578_s_at Hs.547988 cytoplasmic polyadenylation element binding protein 1 CPEB1 chr15q25.2
1564491_at Hs.590784 chromosome X open reading frame 18 CXorf18 chrXq27.2
206588_at Hs.131179 deleted in azoospermia-like DAZL chr3p24.3
228057_at Hs.480378 DNA-damage-inducible transcript 4-like *DDIT4L chr4q23
221630_s_at Hs.223581 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 DDX4 chr5p15.2-p13.1
220004_at Hs.125507 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 DDX43 chr6q12-q13
220493_at Hs.98586 doublesex and mab-3 related transcription factor 1 DMRT1 chr9p24.3
232985_s_at Hs.317659 developmental pluripotency associated 4 *DPPA4 chr3q13.13
210868_s_at Hs.412939 ELOVL family member 6; elongation of long chain fatty acids *ELOVL6 chr4q25
1555299_s_at --- endogenous retroviral family W; env(C7); member 1 (syncytin) ERVWE1 chr7q21-q22
1553614_a_at Hs.652066 hypothetical protein FLJ25694 FLJ25694 chr13q21.31
207899_at Hs.1454 gastric inhibitory polypeptide GIP chr17q21.3-q22
227711_at Hs.524476 gametocyte specific factor 1 *GTSF1 chr12q13.2
219863_at Hs.26663 hect domain and RLD 5 *HERC5 chr4q22.1
209398_at Hs.7644 histone cluster 1; H1c HIST1H1C chr6p21.3
214455_at Hs.553506 histone cluster 1; H2bc HIST1H2BC chr6p21.3
223861_at Hs.298312 HORMA domain containing 1 HORMAD1 chr1q21.2
217522_at Hs.660831 potassium channel; subfamily V; member 2 KCNV2 chr9p24.2
219955_at Hs.685462 LINE-1 type transposase domain containing 1 L1TD1 chr1p31.3
220665_at Hs.242183 leucine zipper protein 4 LUZP4 chrXq23
205668_at Hs.153563 lymphocyte antigen 75 LY75 chr2q24
229475_at Hs.651245 maelstrom homolog (Drosophila) MAEL chr1q24.1
207534_at Hs.73021 melanoma antigen family B; 1 MAGEB1 chrXp21.3
206218_at Hs.113824 melanoma antigen family B; 2 MAGEB2 chrXp21.3
214397_at Hs.25674 methyl-CpG binding domain protein 2 MBD2 chr18q21
204580_at Hs.1695 matrix metallopeptidase 12 (macrophage elastase) *MMP12 chr11q22.3
204702_s_at Hs.404741 nuclear factor (erythroid-derived 2)-like 3 NFE2L3 chr7p15-p14
229352_at Hs.657932 sperm equatorial segment protein 1 *SPESP1 chr15q23
209626_s_at Hs.520259 oxysterol binding protein-like 3 OSBPL3 chr7p15
204879_at Hs.468675 podoplanin *PDPN chr1p36.21
210265_x_at Hs.450254 POU class 5 homeobox 1 pseudogene 3 *POU5F1(OCT4) chr12p13.31
225579_at Hs.274415 PQ loop repeat containing 3 PQLC3 chr2p25.1
204086_at Hs.30743 preferentially expressed antigen in melanoma PRAME chr22q11.22
218700_s_at Hs.115325 RAB7; member RAS oncogene family-like 1 RAB7L1 chr1q32
1558668_s_at Hs.351068 spermatogenesis associated 22 *SPATA22 chr17p13.3
223883_s_at Hs.309767 serine/threonine kinase 31 STK31 chr7p15.3
1553599_a_at Hs.506504 synaptonemal complex protein 3 SYCP3 chr12q
39318_at Hs.2484 T-cell leukemia/lymphoma 1A TCL1A chr14q32.1
206413_s_at Hs.510368 T-cell leukemia/lymphoma 1B TCL1B chr14q32.1
215356_at Hs.646351 tudor domain containing 12 TDRD12 chr19q13.11
223530_at Hs.144439 tudor and KH domain containing TDRKH chr1q21
227642_at Hs.156471 Transcription factor CP2-like 1 TFCP2L1 chr2q14
228505_s_at Hs.487510 transmembrane protein 170 TMEM170 chr16q23.1
208275_x_at Hs.458406 undifferentiated embryonic cell transcription factor 1 UTF1 chr10q26
1553197_at Hs.371738 WD repeat domain 21C WDR21C chr8q21.3
230193_at Hs.709837 WD repeat domain 66 WDR66 chr12q24.31
243161_x_at Hs.335787 zinc finger protein 42 homolog (mouse) ZFP42 chr4q35.2