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Table 2 Top 50 known genes in TW NGMGCTs.

From: Pediatric primary central nervous system germ cell tumors of different prognosis groups show characteristic miRNome traits and chromosome copy number variations

Probe Set ID UniGene ID Gene Title Gene Symbol Location
219935_at Hs.58324 ADAM metallopeptidase with thrombospondin type 1 motif; 5 ADAMTS5 chr21q21.3
219087_at Hs.435655 asporin ASPN chr9q22
205433_at Hs.420483 butyrylcholinesterase BCHE chr3q26.1-q26.2
236179_at Hs.116471 cadherin 11; type 2; OB-cadherin (osteoblast) *CDH11 chr16q22.1
212865_s_at Hs.409662 collagen; type XIV; alpha 1 *COL14A1 chr8q23
202311_s_at Hs.709197 collagen; type I; alpha 1 *COL1A1 chr17q21.33
229218_at Hs.489142 collagen; type I; alpha 2 *COL1A2 chr7q22.1
208096_s_at Hs.47629 collagen; type XXI; alpha 1 *COL21A1 chr6p12.3-p11.2
232458_at Hs.443625 Collagen; type III; alpha 1 (Ehlers-Danlos syndrome type IV) *COL3A1 chr2q31
212489_at Hs.210283 collagen; type V; alpha 1 *COL5A1 chr9q34.2-q34.3
221729_at Hs.445827 collagen; type V; alpha 2 *COL5A2 chr2q14-q32
202575_at Hs.405662 cellular retinoic acid binding protein 2 CRABP2 chr1q21.3
204619_s_at Hs.695930 chondroitin sulfate proteoglycan 2 (versican) CSPG2 chr5q14.3
232090_at Hs.584880 Dynamin 3 DNM3 chr1q24.3
204463_s_at Hs.183713 endothelin receptor type A EDNRA chr4q31.23
204400_at Hs.24587 embryonal Fyn-associated substrate *EFS chr14q11.2-q12
203184_at Hs.519294 fibrillin 2 (congenital contractural arachnodactyly) FBN2 chr5q23-q31
231130_at Hs.645700 FK506 binding protein 7 FKBP7 chr2q31.2
204359_at Hs.533710 fibronectin leucine rich transmembrane protein 2 FLRT2 chr14q24-q32
222853_at Hs.41296 fibronectin leucine rich transmembrane protein 3 FLRT3 chr20p11
243278_at Hs.656280 forkhead box P2 FOXP2 chr7q31
203706_s_at Hs.173859 frizzled homolog 7 (Drosophila) *FZD7 chr2q33
205498_at Hs.125180 growth hormone receptor GHR chr5p13-p12
227070_at Hs.631650 glycosyltransferase 8 domain containing 2 GLT8D2 chr12q
204237_at Hs.470887 GULP; engulfment adaptor PTB domain containing 1 GULP1 chr2q32.3-q33
224997_x_at Hs.533566 H19; imprinted maternally expressed transcript H19 chr11p15.5
215446_s_at Hs.102267 lysyl oxidase LOX chr5q23.2
204069_at Hs.526754 Meis homeobox 1 MEIS1 chr2p14-p13
207480_s_at Hs.510989 Meis homeobox 2 MEIS2 chr15q14
206201_s_at Hs.170355 mesenchyme homeobox 2 MEOX2 chr7p22.1-p21.3
203637_s_at Hs.27695 midline 1 (Opitz/BBB syndrome) MID1 chrXp22
222722_at Hs.708130 osteoglycin OGN chr9q22
213568_at Hs.253247 odd-skipped related 2 (Drosophila) OSR2 chr8q22.2
225975_at Hs.591691 protocadherin 18 PCDH18 chr4q31
203131_at Hs.74615 platelet-derived growth factor receptor; alpha polypeptide PDGFRA chr4q11-q13
212915_at Hs.434900 PDZ domain containing RING finger 3 PDZRN3 chr3p13
227419_x_at Hs.204947 placenta-specific 9 PLAC9 chr10q22.3
210809_s_at Hs.136348 periostin; osteoblast specific factor POSTN chr13q13.3
238852_at Hs.657841 Paired related homeobox 1 PRRX1 chr1q24
208131_s_at Hs.302085 prostaglandin I2 (prostacyclin) synthase PTGIS chr20q13.13
214043_at Hs.446083 protein tyrosine phosphatase; receptor type; D PTPRD chr9p23-p24.3
225946_at Hs.696433 Ras association (RalGDS/AF-6) domain family member 8 RASSF8 chr12p12.3
232060_at Hs.654491 receptor tyrosine kinase-like orphan receptor 1 ROR1 chr1p32-p31
205529_s_at Hs.368431 runt-related transcription factor 1; translocated to; 1 RUNX1T1 chr8q22
202037_s_at Hs.213424 secreted frizzled-related protein 1 *SFRP1 chr8p12-p11.1
213139_at Hs.360174 snail homolog 2 (Drosophila) *SNAI2 (SLUG) chr8q11
228821_at Hs.709275 ST6 beta-galactosamide alpha-2;6-sialyltranferase 2 ST6GAL2 chr2q11.2-q12.1
209651_at Hs.513530 transforming growth factor beta 1 induced transcript 1 TGFB1I1 chr16p11.2
203083_at Hs.371147 thrombospondin 2 THBS2 chr6q27
229404_at Hs.708196 twist homolog 2 (Drosophila) *TWIST2 chr2q37.3