Table 2 Top 50 known genes in TW NGMGCTs.

219935_at

Hs.58324

ADAM metallopeptidase with thrombospondin type 1 motif; 5

ADAMTS5

chr21q21.3

219087_at

Hs.435655

asporin

ASPN

chr9q22

205433_at

Hs.420483

butyrylcholinesterase

BCHE

chr3q26.1-q26.2

236179_at

Hs.116471

cadherin 11; type 2; OB-cadherin (osteoblast)

*CDH11

chr16q22.1

212865_s_at

Hs.409662

collagen; type XIV; alpha 1

*COL14A1

chr8q23

202311_s_at

Hs.709197

collagen; type I; alpha 1

*COL1A1

chr17q21.33

229218_at

Hs.489142

collagen; type I; alpha 2

*COL1A2

chr7q22.1

208096_s_at

Hs.47629

collagen; type XXI; alpha 1

*COL21A1

chr6p12.3-p11.2

232458_at

Hs.443625

Collagen; type III; alpha 1 (Ehlers-Danlos syndrome type IV)

*COL3A1

chr2q31

212489_at

Hs.210283

collagen; type V; alpha 1

*COL5A1

chr9q34.2-q34.3

221729_at

Hs.445827

collagen; type V; alpha 2

*COL5A2

chr2q14-q32

202575_at

Hs.405662

cellular retinoic acid binding protein 2

CRABP2

chr1q21.3

204619_s_at

Hs.695930

chondroitin sulfate proteoglycan 2 (versican)

CSPG2

chr5q14.3

232090_at

Hs.584880

Dynamin 3

DNM3

chr1q24.3

204463_s_at

Hs.183713

endothelin receptor type A

EDNRA

chr4q31.23

204400_at

Hs.24587

embryonal Fyn-associated substrate

*EFS

chr14q11.2-q12

203184_at

Hs.519294

fibrillin 2 (congenital contractural arachnodactyly)

FBN2

chr5q23-q31

231130_at

Hs.645700

FK506 binding protein 7

FKBP7

chr2q31.2

204359_at

Hs.533710

fibronectin leucine rich transmembrane protein 2

FLRT2

chr14q24-q32

222853_at

Hs.41296

fibronectin leucine rich transmembrane protein 3

FLRT3

chr20p11

243278_at

Hs.656280

forkhead box P2

FOXP2

chr7q31

203706_s_at

Hs.173859

frizzled homolog 7 (Drosophila)

*FZD7

chr2q33

205498_at

Hs.125180

growth hormone receptor

GHR

chr5p13-p12

227070_at

Hs.631650

glycosyltransferase 8 domain containing 2

GLT8D2

chr12q

204237_at

Hs.470887

GULP; engulfment adaptor PTB domain containing 1

GULP1

chr2q32.3-q33

224997_x_at

Hs.533566

H19; imprinted maternally expressed transcript

H19

chr11p15.5

215446_s_at

Hs.102267

lysyl oxidase

LOX

chr5q23.2

204069_at

Hs.526754

Meis homeobox 1

MEIS1

chr2p14-p13

207480_s_at

Hs.510989

Meis homeobox 2

MEIS2

chr15q14

206201_s_at

Hs.170355

mesenchyme homeobox 2

MEOX2

chr7p22.1-p21.3

203637_s_at

Hs.27695

midline 1 (Opitz/BBB syndrome)

MID1

chrXp22

222722_at

Hs.708130

osteoglycin

OGN

chr9q22

213568_at

Hs.253247

odd-skipped related 2 (Drosophila)

OSR2

chr8q22.2

225975_at

Hs.591691

protocadherin 18

PCDH18

chr4q31

203131_at

Hs.74615

platelet-derived growth factor receptor; alpha polypeptide

PDGFRA

chr4q11-q13

212915_at

Hs.434900

PDZ domain containing RING finger 3

PDZRN3

chr3p13

227419_x_at

Hs.204947

placenta-specific 9

PLAC9

chr10q22.3

210809_s_at

Hs.136348

periostin; osteoblast specific factor

POSTN

chr13q13.3

238852_at

Hs.657841

Paired related homeobox 1

PRRX1

chr1q24

208131_s_at

Hs.302085

prostaglandin I2 (prostacyclin) synthase

PTGIS

chr20q13.13

214043_at

Hs.446083

protein tyrosine phosphatase; receptor type; D

PTPRD

chr9p23-p24.3

225946_at

Hs.696433

Ras association (RalGDS/AF-6) domain family member 8

RASSF8

chr12p12.3

232060_at

Hs.654491

receptor tyrosine kinase-like orphan receptor 1

ROR1

chr1p32-p31

205529_s_at

Hs.368431

runt-related transcription factor 1; translocated to; 1

RUNX1T1

chr8q22

202037_s_at

Hs.213424

secreted frizzled-related protein 1

*SFRP1

chr8p12-p11.1

213139_at

Hs.360174

snail homolog 2 (Drosophila)

*SNAI2 (SLUG)

chr8q11

228821_at

Hs.709275

ST6 beta-galactosamide alpha-2;6-sialyltranferase 2

ST6GAL2

chr2q11.2-q12.1

209651_at

Hs.513530

transforming growth factor beta 1 induced transcript 1

TGFB1I1

chr16p11.2

203083_at

Hs.371147

thrombospondin 2

THBS2

chr6q27

229404_at

Hs.708196

twist homolog 2 (Drosophila)

*TWIST2

chr2q37.3