Table 4 Deleted chromosomal regions in NGMGCTs and the genes within those regions.

S1

4q13.3-4q28.3

75084501

131387610

ABCG2, ADAD1, ADH1A, ADH1B, ADH1C, ADH4, ADH5ADH6, ADH7, AFF1, AGPAT9, AGXT2L1, AIMP1, ALPK1, ANK2, ANKRD50, ANKRD56, ANTXR2, ANXA3, ANXA5, AP1AR, ARD1B, AREG, ARHGAP24, ARSJ, ART3, ATOH1, BANK1, BBS7, BBS12, BDH2, BMP2K, BMP3, BMPR1B, BTC, C4orf3, C4orf11, C4orf12, C4ord17, C4orf21, C4ord22, C4orf26, C4orf29, C4orf31, C4ord32, C4orf33, C4orf36, C4orf37, CAMK2D, CAPSP6, CCDC109B, CCDC158, CCNA2, CCNG2, CCN1, CDKL2, CDS1, CENPE, CEP170L, CFI, CISD2, CNOT6L, COL25A1, COPS4, COQ2, CXCL2, CXCL3, CXCL9, CXCL10, CXCL11, CXCL13, CXXC4, CTP2U1, DAPP1, DDIT4L, DKK2, DMP1, DNAJB14, DSPP, EEF1AL7, EGF, EIF4E, ELOVL6, EMCN, ENOPH1, ENPEP, EPGN, EREG, EXOSC9, FABP2, FAM13A, FAM13AOS, FAM47E, FAM175A, FAM190A, FAT4, FGF2, FGF5, FLJ20184, FRAS1, G3BP2, GAR1, GDEP, GK2, GPRIN3, GRID2, GSTCD, H2AAFZ, HADH, HELQ, HERC3, HERC5, HERC6, HNRPDL, HPGDS, HPSE, HSD17B11, HSD17B13, HSPA4L, IBSP, IL2, IL21, INTS12, INTU, KIAA1109, KLHL8, LARP1B, LARP7, LEF1, LIN54, LOC100192379, LOC256880, LOC285419, LOC285456, LOC641518, LOC729338, LRIT3, MAD2L1, MANBA, MAPK10, MAPKSP1, MEPE, METAP1, METTL14, MFSD8, MMRN1, MRPL1, MRPS18C, MTHFD2L, MTTP, MYOZ2, NAAA, NAP1L5, NDST3, NDST4, NEUROG2, NFKB1, NHEDC1, NHEDC2, NKX6-1, NPNT, NUDT6, NUDT9, NUP54, OSTC, PAPSS1, PAQP3, PARM1, PCNAP1, PDE5A, PDHA2, PDLIM5, PGRMC2, PHF17, PIGY, PITX2, PKD2, PLA2G12A, PLAC8, PLK4, PPA2, PPBPL2, PPEF2, PPM1K, PPP3CA, PRDM5, PRDM8, PRKG2, PRSS12, PTPN13, QRFPR, RAP1GDS1, RASGEF1B, RCHY1, RG9MTD2, RPL34, RRH, SCARB2, SCD5, SCLT1, SDAD1, SEC24B, SEC24D, SEC31A, SEP11, SGMS2, SHROOM3, SLC10A6, SLC25A31, SLC39A8, SMARCAD1, SNCA, SNHG8, SNORA24, SPARCL1, SPATA5, SPP1, SPRY1, *SYNPO2, TACR3, TBCK, TET2, THAP6, THAP9, TIFA, TIGD2, TMEM150C, TMEM155, TMSL3, TNIP3, TRAM1L1, TRPC3, TSPAN5, UBE2D3, YGT8, UNC5C, USO1, USP53, WDFY3

hsa-miR-302A, has-miR-302B, has-miR-302C, has-miR-302D, has-miR-367, has-miR-575, has-miR-577

S2

9p11.2-9q13

44703105

70128535

ANKRE20A2, ANKRD20A3, ANKRD20A4, AQP7P1, AQP7P2, CBWD3, CBWD5, CBWD6, CCDC29, FAM27A, FAM27B, FAM27C, FAM74A4, FAM75A5, FAM75A7, FXOD4L2, FOXD4L3, FOXD4L4, FOXD4L5, FOXD4L6, KGFLP1, LOC100133920, LOC440839, LOC440896, LOC442421, MGC21881, PGM5P2

(No know ones)