Table 1 Percentage of genes in each of the ten functional categories in five PVSets
From: Flux of transcript patterns during soybean seed development
Category Name | Gene Examples | PVSet1 | PVSet2 | PVSet4 | PVSet6 | PVSet11 |
|---|---|---|---|---|---|---|
Cell Growth & Maintenance | Tubulin, auxin-regulated, histone | 26.3% | 40.0% | 39.3% | 29.8% | 25.4% |
Energy | Chlorophyll binding, RuBisCO | 3.0% | 1.7% | 1.8% | 27.7% | 6.5% |
Hypothetical/Unknown Function | Hypothetical/unknown function in databases | 24.1% | 35.0% | 25.0% | 17.4% | 32.5% |
Other (Miscellaneous) | Transposons, cell death, pollen-related | 1.5% | 1.7% | 1.8% | 1.1% | 0.6% |
Oxidative | Metallothionein, cysteine protease, peroxidase | 0.8% | 2.5% | 3.6% | 0.7% | 0.6% |
Stress, Defense, Shock-related | Chitinase, drought resistance, stress-induced | 4.5% | 5.8% | 8.9% | 2.5% | 8.9% |
Signaling | Cytochrome P450, protein kinases, calmodulin | 9.0% | 5.8% | 8.9% | 10.3% | 5.3% |
Seed Proteins | Lipoxygenase, seed maturation protein, trypsin inhibitor | 16.5% | 0.0% | 0.0% | 5.0% | 0.0% |
Transcription | DNA-binding, transcription factors, zinc finger proteins | 13.5% | 5.8% | 3.6% | 3.9% | 13.0% |
Transporters and Membrane Proteins | Sugar/amino acid transporters, membrane intrinsic proteins | 0.8% | 1.7% | 7.1% | 1.8% | 7.1% |