TY - JOUR AU - Bar, D. AU - Tauer, L. W. AU - Bennett, G. AU - Gonzalez, R. N. AU - Hertl, J. A. AU - Schukken, Y. H. AU - Schulte, H. F. AU - Welcome, F. L. AU - Grohn, Y. T. PY - 2008 DA - 2008// TI - The cost of generic clinical mastitis in dairy cows as estimated by using dynamic programming JO - J Dairy Sci VL - 91 UR - https://doi.org/10.3168/jds.2007-0573 DO - 10.3168/jds.2007-0573 ID - Bar2008 ER - TY - JOUR AU - Seegers, H. AU - Fourichon, C. AU - Beaudeau, F. PY - 2003 DA - 2003// TI - Production effects related to mastitis and mastitis economics in dairy cattle herds JO - Vet Res VL - 34 UR - https://doi.org/10.1051/vetres:2003027 DO - 10.1051/vetres:2003027 ID - Seegers2003 ER - TY - JOUR AU - Compton, C. W. AU - Cursons, R. T. AU - Barnett, C. M. AU - McDougall, S. PY - 2009 DA - 2009// TI - Expression of innate resistance factors in mammary secretion from periparturient dairy heifers and their association with subsequent infection status JO - Vet Immunol Immunopathol VL - 127 UR - https://doi.org/10.1016/j.vetimm.2008.10.331 DO - 10.1016/j.vetimm.2008.10.331 ID - Compton2009 ER - TY - JOUR AU - Takeshima, S. AU - Matsumoto, Y. AU - Chen, J. AU - Yoshida, T. AU - Mukoyama, H. AU - Aida, Y. PY - 2008 DA - 2008// TI - Evidence for cattle major histocompatibility complex (BoLA) class II DQA1 gene heterozygote advantage against clinical mastitis caused by Streptococci and Escherichia species JO - Tissue Antigens VL - 72 UR - https://doi.org/10.1111/j.1399-0039.2008.01140.x DO - 10.1111/j.1399-0039.2008.01140.x ID - Takeshima2008 ER - TY - JOUR AU - Pyorala, S. PY - 2008 DA - 2008// TI - Mastitis in post-partum dairy cows JO - Reprod Domest Anim VL - 43 ID - Pyorala2008 ER - TY - JOUR AU - Burvenich, C. AU - Van Merris, V. AU - Mehrzad, J. AU - Diez-Fraile, A. AU - Duchateau, L. PY - 2003 DA - 2003// TI - Severity of E. coli mastitis is mainly determined by cow factors JO - Vet Res VL - 34 UR - https://doi.org/10.1051/vetres:2003023 DO - 10.1051/vetres:2003023 ID - Burvenich2003 ER - TY - JOUR AU - Vandeputte-Van Messom, G. AU - Burvenich, C. AU - Roets, E. AU - Massart-Leen, A. M. AU - Heyneman, R. AU - Kremer, W. D. AU - Brand, A. PY - 1993 DA - 1993// TI - Classification of newly calved cows into moderate and severe responders to experimentally induced Escherichia coli mastitis JO - J Dairy Res VL - 60 UR - https://doi.org/10.1017/S002202990002731X DO - 10.1017/S002202990002731X ID - Vandeputte-Van Messom1993 ER - TY - CHAP AU - Hill, A. W. PY - 1994 DA - 1994// BT - Escherichia coli mastitis PB - CAB international CY - Wallingford ID - Hill1994 ER - TY - JOUR AU - Adkinson, R. W. AU - Ingawa, K. H. AU - Blouin, D. C. AU - Nickerson, S. C. PY - 1993 DA - 1993// TI - Distribution of clinical mastitis among quarters of the bovine udder JO - J Dairy Sci VL - 76 UR - https://doi.org/10.3168/jds.S0022-0302(93)77684-5 DO - 10.3168/jds.S0022-0302(93)77684-5 ID - Adkinson1993 ER - TY - JOUR AU - Dopfer, D. AU - Barkema, H. W. AU - Lam, T. J. AU - Schukken, Y. H. AU - Gaastra, W. PY - 1999 DA - 1999// TI - Recurrent clinical mastitis caused by Escherichia coli in dairy cows JO - J Dairy Sci VL - 82 UR - https://doi.org/10.3168/jds.S0022-0302(99)75211-2 DO - 10.3168/jds.S0022-0302(99)75211-2 ID - Dopfer1999 ER - TY - JOUR AU - Hirvonen, J. AU - Eklund, K. AU - Teppo, A. M. AU - Huszenicza, G. AU - Kulcsar, M. AU - Saloniemi, H. AU - Pyorala, S. PY - 1999 DA - 1999// TI - Acute phase response in dairy cows with experimentally induced Escherichia coli mastitis JO - Acta Vet Scand VL - 40 ID - Hirvonen1999 ER - TY - JOUR AU - Yang, W. AU - Zerbe, H. AU - Petzl, W. AU - Brunner, R. M. AU - Gunther, J. AU - Draing, C. AU - von Aulock, S. AU - Schuberth, H. J. AU - Seyfert, H. M. PY - 2008 DA - 2008// TI - Bovine TLR2 and TLR4 properly transduce signals from Staphylococcus aureus and E. coli, but S. aureus fails to both activate NF-kappaB in mammary epithelial cells and to quickly induce TNFalpha and interleukin-8 (CXCL8) expression in the udder JO - Mol Immunol VL - 45 UR - https://doi.org/10.1016/j.molimm.2007.09.004 DO - 10.1016/j.molimm.2007.09.004 ID - Yang2008 ER - TY - JOUR AU - Mehrzad, J. AU - Dosogne, H. AU - Meyer, E. AU - Burvenich, C. PY - 2001 DA - 2001// TI - Local and systemic effects of endotoxin mastitis on the chemiluminescence of milk and blood neutrophils in dairy cows JO - Vet Res VL - 32 UR - https://doi.org/10.1051/vetres:2001100 DO - 10.1051/vetres:2001100 ID - Mehrzad2001 ER - TY - JOUR AU - Blum, J. W. AU - Dosogne, H. AU - Hoeben, D. AU - Vangroenweghe, F. AU - Hammon, H. M. AU - Bruckmaier, R. M. AU - Burvenich, C. PY - 2000 DA - 2000// TI - Tumor necrosis factor-alpha and nitrite/nitrate responses during acute mastitis induced by Escherichia coli infection and endotoxin in dairy cows JO - Domest Anim Endocrinol VL - 19 UR - https://doi.org/10.1016/S0739-7240(00)00079-5 DO - 10.1016/S0739-7240(00)00079-5 ID - Blum2000 ER - TY - JOUR AU - Hiss, S. AU - Mielenz, M. AU - Bruckmaier, R. M. AU - Sauerwein, H. PY - 2004 DA - 2004// TI - Haptoglobin concentrations in blood and milk after endotoxin challenge and quantification of mammary Hp mRNA expression JO - J Dairy Sci VL - 87 UR - https://doi.org/10.3168/jds.S0022-0302(04)73516-X DO - 10.3168/jds.S0022-0302(04)73516-X ID - Hiss2004 ER - TY - JOUR AU - Jiang, L. AU - Sorensen, P. AU - Rontved, C. AU - Vels, L. AU - Ingvartsen, K. L. PY - 2008 DA - 2008// TI - Gene expression profiling of liver from dairy cows treated intra-mammary with lipopolysaccharide JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-443 DO - 10.1186/1471-2164-9-443 ID - Jiang2008 ER - TY - JOUR AU - Petzl, W. AU - Zerbe, H. AU - Gunther, J. AU - Yang, W. AU - Seyfert, H. M. AU - Nurnberg, G. AU - Schuberth, H. J. PY - 2008 DA - 2008// TI - Escherichia coli, but not Staphylococcus aureus triggers an early increased expression of factors contributing to the innate immune defense in the udder of the cow JO - Vet Res VL - 39 UR - https://doi.org/10.1051/vetres:2007057 DO - 10.1051/vetres:2007057 ID - Petzl2008 ER - TY - JOUR AU - Herrero, J. AU - Valencia, A. AU - Dopazo, J. PY - 2001 DA - 2001// TI - A hierarchical unsupervised growing neural network for clustering gene expression patterns JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.2.126 DO - 10.1093/bioinformatics/17.2.126 ID - Herrero2001 ER - TY - JOUR AU - Zhou, J. AU - Chehab, R. AU - Tkalcevic, J. AU - Naylor, M. J. AU - Harris, J. AU - Wilson, T. J. AU - Tsao, S. AU - Tellis, I. AU - Zavarsek, S. AU - Xu, D. AU - Lapinskas, E. J. AU - Visvader, J. AU - Lindeman, G. J. AU - Thomas, R. AU - Ormandy, C. J. AU - Hertzog, P. J. AU - Kola, I. AU - Pritchard, M. A. PY - 2005 DA - 2005// TI - Elf5 is essential for early embryogenesis and mammary gland development during pregnancy and lactation JO - Embo J VL - 24 UR - https://doi.org/10.1038/sj.emboj.7600538 DO - 10.1038/sj.emboj.7600538 ID - Zhou2005 ER - TY - JOUR AU - Harris, J. AU - Stanford, P. M. AU - Sutherland, K. AU - Oakes, S. R. AU - Naylor, M. J. AU - Robertson, F. G. AU - Blazek, K. D. AU - Kazlauskas, M. AU - Hilton, H. N. AU - Wittlin, S. AU - Alexander, W. S. AU - Lindeman, G. J. AU - Visvader, J. E. AU - Ormandy, C. J. PY - 2006 DA - 2006// TI - Socs2 and elf5 mediate prolactin-induced mammary gland development JO - Mol Endocrinol VL - 20 UR - https://doi.org/10.1210/me.2005-0473 DO - 10.1210/me.2005-0473 ID - Harris2006 ER - TY - JOUR AU - Yang, D. AU - Chen, Q. AU - Hoover, D. M. AU - Staley, P. AU - Tucker, K. D. AU - Lubkowski, J. AU - Oppenheim, J. J. PY - 2003 DA - 2003// TI - Many chemokines including CCL20/MIP-3alpha display antimicrobial activity JO - J Leukoc Biol VL - 74 UR - https://doi.org/10.1189/jlb.0103024 DO - 10.1189/jlb.0103024 ID - Yang2003 ER - TY - JOUR AU - Pascual, M. AU - Gomez-Lechon, M. J. AU - Castell, J. V. AU - Jover, R. PY - 2008 DA - 2008// TI - ATF5 is a highly abundant liver-enriched transcription factor that cooperates with constitutive androstane receptor in the transactivation of CYP2B6: implications in hepatic stress responses JO - Drug Metab Dispos VL - 36 UR - https://doi.org/10.1124/dmd.107.019380 DO - 10.1124/dmd.107.019380 ID - Pascual2008 ER - TY - JOUR AU - Merle, R. AU - Schroder, A. AU - Hamann, J. PY - 2007 DA - 2007// TI - Cell function in the bovine mammary gland: a preliminary study on interdependence of healthy and infected udder quarters JO - J Dairy Res VL - 74 UR - https://doi.org/10.1017/S002202990600238X DO - 10.1017/S002202990600238X ID - Merle2007 ER - TY - JOUR AU - Paape, M. J. AU - Pearson, R. E. AU - Wergin, W. P. AU - Guidry, A. J. PY - 1977 DA - 1977// TI - Enhancement of chemotactic response of polymorphonuclear leukocytes into the mammary gland and isolation from milk JO - J Dairy Sci VL - 60 UR - https://doi.org/10.3168/jds.S0022-0302(77)83828-9 DO - 10.3168/jds.S0022-0302(77)83828-9 ID - Paape1977 ER - TY - JOUR AU - Swanson, K. M. AU - Stelwagen, K. AU - Dobson, J. AU - Henderson, H. V. AU - Davis, S. R. AU - Farr, V. C. AU - Singh, K. PY - 2009 DA - 2009// TI - Transcriptome profiling of Streptococcus uberis-induced mastitis reveals fundamental differences between immune gene expression in the mammary gland and in a primary cell culture model JO - J Dairy Sci VL - 92 UR - https://doi.org/10.3168/jds.2008-1382 DO - 10.3168/jds.2008-1382 ID - Swanson2009 ER - TY - JOUR AU - Zheng, J. AU - Watson, A. D. AU - Kerr, D. E. PY - 2006 DA - 2006// TI - Genome-wide expression analysis of lipopolysaccharide-induced mastitis in a mouse model JO - Infect Immun VL - 74 UR - https://doi.org/10.1128/IAI.74.3.1907-1915.2006 DO - 10.1128/IAI.74.3.1907-1915.2006 ID - Zheng2006 ER - TY - JOUR AU - Jaffrezic, F. AU - de Koning, D. J. AU - Boettcher, P. J. AU - Bonnet, A. AU - Buitenhuis, B. AU - Closset, R. AU - Dejean, S. AU - Delmas, C. AU - Detilleux, J. C. AU - Dovc, P. AU - Duval, M. AU - Foulley, J. L. AU - Hedegaard, J. AU - Hornshoj, H. AU - Hulsegge, I. AU - Janss, L. AU - Jensen, K. AU - Jiang, L. AU - Lavric, M. AU - Le Cao, K. A. AU - Lund, M. S. AU - Malinverni, R. AU - Marot, G. AU - Nie, H. AU - Petzl, W. AU - Pool, M. H. AU - Robert-Granie, C. AU - San Cristobal, M. AU - van Schothorst, E. M. AU - Schuberth, H. J. PY - 2007 DA - 2007// TI - Analysis of the real EADGENE data set: comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (open access publication) JO - Genet Sel Evol VL - 39 UR - https://doi.org/10.1186/1297-9686-39-6-633 DO - 10.1186/1297-9686-39-6-633 ID - Jaffrezic2007 ER - TY - JOUR AU - Zadissa, A. AU - McEwan, J. C. AU - Brown, C. M. PY - 2007 DA - 2007// TI - Inference of transcriptional regulation using gene expression data from the bovine and human genomes JO - BMC Genomics VL - 8 UR - https://doi.org/10.1186/1471-2164-8-265 DO - 10.1186/1471-2164-8-265 ID - Zadissa2007 ER - TY - JOUR AU - Mysorekar, I. U. AU - Mulvey, M. A. AU - Hultgren, S. J. AU - Gordon, J. I. PY - 2002 DA - 2002// TI - Molecular regulation of urothelial renewal and host defenses during infection with uropathogenic Escherichia coli JO - J Biol Chem VL - 277 UR - https://doi.org/10.1074/jbc.M110560200 DO - 10.1074/jbc.M110560200 ID - Mysorekar2002 ER - TY - JOUR AU - Rudolph, M. C. AU - McManaman, J. L. AU - Phang, T. AU - Russell, T. AU - Kominsky, D. J. AU - Serkova, N. J. AU - Stein, T. AU - Anderson, S. M. AU - Neville, M. C. PY - 2007 DA - 2007// TI - Metabolic regulation in the lactating mammary gland: a lipid synthesizing machine JO - Physiol Genomics VL - 28 UR - https://doi.org/10.1152/physiolgenomics.00020.2006 DO - 10.1152/physiolgenomics.00020.2006 ID - Rudolph2007 ER - TY - JOUR AU - Jenner, R. G. AU - Young, R. A. PY - 2005 DA - 2005// TI - Insights into host responses against pathogens from transcriptional profiling JO - Nat Rev Microbiol VL - 3 UR - https://doi.org/10.1038/nrmicro1126 DO - 10.1038/nrmicro1126 ID - Jenner2005 ER - TY - JOUR AU - Suojala, L. AU - Orro, T. AU - Jarvinen, H. AU - Saatsi, J. AU - Pyorala, S. PY - 2008 DA - 2008// TI - Acute phase response in two consecutive experimentally induced E. coli intramammary infections in dairy cows JO - Acta Vet Scand VL - 50 UR - https://doi.org/10.1186/1751-0147-50-18 DO - 10.1186/1751-0147-50-18 ID - Suojala2008 ER - TY - JOUR AU - Boehmer, J. L. AU - Bannerman, D. D. AU - Shefcheck, K. AU - Ward, J. L. PY - 2008 DA - 2008// TI - Proteomic analysis of differentially expressed proteins in bovine milk during experimentally induced Escherichia coli mastitis JO - J Dairy Sci VL - 91 UR - https://doi.org/10.3168/jds.2008-1297 DO - 10.3168/jds.2008-1297 ID - Boehmer2008 ER - TY - JOUR AU - Lutzow, Y. C. AU - Donaldson, L. AU - Gray, C. P. AU - Vuocolo, T. AU - Pearson, R. D. AU - Reverter, A. AU - Byrne, K. A. AU - Sheehy, P. A. AU - Windon, R. AU - Tellam, R. L. PY - 2008 DA - 2008// TI - Identification of immune genes and proteins involved in the response of bovine mammary tissue to Staphylococcus aureus infection JO - BMC Vet Res VL - 4 UR - https://doi.org/10.1186/1746-6148-4-18 DO - 10.1186/1746-6148-4-18 ID - Lutzow2008 ER - TY - JOUR AU - Bannerman, D. D. AU - Kauf, A. C. AU - Paape, M. J. AU - Springer, H. R. AU - Goff, J. P. PY - 2008 DA - 2008// TI - Comparison of Holstein and Jersey innate immune responses to Escherichia coli intramammary infection JO - J Dairy Sci VL - 91 UR - https://doi.org/10.3168/jds.2008-1013 DO - 10.3168/jds.2008-1013 ID - Bannerman2008 ER - TY - JOUR AU - Caswell, J. L. AU - Middleton, D. M. AU - Sorden, S. D. AU - Gordon, J. R. PY - 1998 DA - 1998// TI - Expression of the neutrophil chemoattractant interleukin-8 in the lesions of bovine pneumonic pasteurellosis JO - Vet Pathol VL - 35 UR - https://doi.org/10.1177/030098589803500206 DO - 10.1177/030098589803500206 ID - Caswell1998 ER - TY - JOUR AU - Swanson, K. AU - Gorodetsky, S. AU - Good, L. AU - Davis, S. AU - Musgrave, D. AU - Stelwagen, K. AU - Farr, V. AU - Molenaar, A. PY - 2004 DA - 2004// TI - Expression of a beta-defensin mRNA, lingual antimicrobial peptide, in bovine mammary epithelial tissue is induced by mastitis JO - Infect Immun VL - 72 UR - https://doi.org/10.1128/IAI.72.12.7311-7314.2004 DO - 10.1128/IAI.72.12.7311-7314.2004 ID - Swanson2004 ER - TY - JOUR AU - Gentleman, R. C. AU - Carey, V. J. AU - Bates, D. M. AU - Bolstad, B. AU - Dettling, M. AU - Dudoit, S. AU - Ellis, B. AU - Gautier, L. AU - Ge, Y. AU - Gentry, J. AU - Hornik, K. AU - Hothorn, T. AU - Huber, W. AU - Iacus, S. AU - Irizarry, R. AU - Leisch, F. AU - Li, C. AU - Maechler, M. AU - Rossini, A. J. AU - Sawitzki, G. AU - Smith, C. AU - Smyth, G. AU - Tierney, L. AU - Yang, J. Y. AU - Zhang, J. PY - 2004 DA - 2004// TI - Bioconductor: open software development for computational biology and bioinformatics JO - Genome Biol VL - 5 UR - https://doi.org/10.1186/gb-2004-5-10-r80 DO - 10.1186/gb-2004-5-10-r80 ID - Gentleman2004 ER - TY - JOUR AU - Irizarry, R. A. AU - Bolstad, B. M. AU - Collin, F. AU - Cope, L. M. AU - Hobbs, B. AU - Speed, T. P. PY - 2003 DA - 2003// TI - Summaries of Affymetrix GeneChip probe level data JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gng015 DO - 10.1093/nar/gng015 ID - Irizarry2003 ER - TY - BOOK AU - Smyth, G. K. PY - 2004 DA - 2004// TI - Linear models and empirical bayes methods for assessing differential expression in microarray experiments ID - Smyth2004 ER - TY - JOUR AU - Tusher, V. G. AU - Tibshirani, R. AU - Chu, G. PY - 2001 DA - 2001// TI - Significance analysis of microarrays applied to the ionizing radiation response JO - Proc Natl Acad Sci USA VL - 98 UR - https://doi.org/10.1073/pnas.091062498 DO - 10.1073/pnas.091062498 ID - Tusher2001 ER - TY - STD TI - Multiexperiment Viewer MeV V4.2.02. [http://www.tm4.org/mev.html] UR - http://www.tm4.org/mev.html ID - ref42 ER - TY - STD TI - Pantherdb. [http://www.pantherdb.org/] UR - http://www.pantherdb.org/ ID - ref43 ER - TY - STD TI - Frijters R, Heupers B, van Beek P, Bouwhuis M, van Schaik R, de Vlieg J, Polman J, Alkema W: CoPub: a literature-based keyword enrichment tool for microarray data analysis. Nucleic Acids Res. 2008, W406-410. 10.1093/nar/gkn215. 36 Web Server ID - ref44 ER - TY - STD TI - Ho Sui SJ, Fulton DL, Arenillas DJ, Kwon AT, Wasserman WW: oPOSSUM: integrated tools for analysis of regulatory motif over-representation. Nucleic Acids Res. 2007, W245-252. 10.1093/nar/gkm427. 35 Web Server ID - ref45 ER - TY - CHAP AU - Hintermair, V. PY - 2007 DA - 2007// TI - Comparative Analysis of Bos taurus and Homo sapiens DNA Microarrays BT - Master's Thesis, Technical University, Munich; ID - Hintermair2007 ER - TY - JOUR AU - Klein, C. AU - Bauersachs, S. AU - Ulbrich, S. E. AU - Einspanier, R. AU - Meyer, H. H. AU - Schmidt, S. E. AU - Reichenbach, H. D. AU - Vermehren, M. AU - Sinowatz, F. AU - Blum, H. AU - Wolf, E. PY - 2006 DA - 2006// TI - Monozygotic twin model reveals novel embryo-induced transcriptome changes of bovine endometrium in the preattachment period JO - Biol Reprod VL - 74 UR - https://doi.org/10.1095/biolreprod.105.046748 DO - 10.1095/biolreprod.105.046748 ID - Klein2006 ER - TY - JOUR AU - Perez, R. AU - Tupac-Yupanqui, I. AU - Dunner, S. PY - 2008 DA - 2008// TI - Evaluation of suitable reference genes for gene expression studies in bovine muscular tissue JO - BMC Mol Biol VL - 9 UR - https://doi.org/10.1186/1471-2199-9-79 DO - 10.1186/1471-2199-9-79 ID - Perez2008 ER - TY - JOUR AU - Bauersachs, S. AU - Rehfeld, S. AU - Ulbrich, S. E. AU - Mallok, S. AU - Prelle, K. AU - Wenigerkind, H. AU - Einspanier, R. AU - Blum, H. AU - Wolf, E. PY - 2004 DA - 2004// TI - Monitoring gene expression changes in bovine oviduct epithelial cells during the oestrous cycle JO - J Mol Endocrinol VL - 32 UR - https://doi.org/10.1677/jme.0.0320449 DO - 10.1677/jme.0.0320449 ID - Bauersachs2004 ER - TY - JOUR AU - Livak, K. J. AU - Schmittgen, T. D. PY - 2001 DA - 2001// TI - Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method JO - Methods VL - 25 UR - https://doi.org/10.1006/meth.2001.1262 DO - 10.1006/meth.2001.1262 ID - Livak2001 ER -