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Table 1 EST match to genes in the Atlantic salmon MHC IA and IB regions

From: Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon

Genes in IA/IB region

Abbreviation

Alias

EST/cDNA

MHC class I

UDA

 

GE768625, GE768626(a)

MHC class I

UGA

 

CB498868, EG903380

Ring finger protein 1

RING1

RNF1

GE771348, GE771349, EG819994(b)

Ribosomal protein S18

RPS18

KE3

EG880672

Vacuolar protein sorting 52

VSP52

SAC2

BT056476

VHSV induced gene

VHSV

 

BT072557

MHC Class I

ZAA

 

EG816925, DQ099914

Hypothetical Protein

Hypo

 

EG844714

Activating transcription factor 6

ATF6

CREBL1

GE795962(b)

Tenascin XB

TNXB

XB

n.i

Proteasome subunit, beta type, 7

PSMB7

Z

BT046757

Centromere Protein A

CENPA

CENP-A

BT048223

MHC Class I

ZBA

 

DY730127, EG827413

MHC Class I

ZCA

 

DW576043, DW559009, DW559010, DY740683

MHC Class I

ZDA

 

n.i

ATPase family, AAA domain containing 2

ATAD2

 

DY713892, DW547688, DY719530(b)

Zinc fingers and homeoboxes 1

ZHX1

 

EG895467, DW549831, DW560133, DW560132(b)

Zinc fingers and homeoboxes 2

ZHX2

 

EG815474, Eg815473, DW567814, DW566896(b)

Genes in 184H23

   

aryl hydrocarbon receptor 2 alpha

AhR2

 

AY219864

aryl hydrocarbon receptor 1

AhR1

 

n.i

MHC Class I

UHA1

 

EG787974, DW548896(a)

MHC Class I

UHA2

 

GE766956, DY713347

1-acylglycerol-3-phosphate O-acyltransferase 3

AGPAT3

LPAAT-gamma

GE796418, DW540133

Pyroxidal kinase

PDXK

PNK

BT045602

Genes in 114L13

   

von Willebrand factor A domain containing 5A

VWA5A

BCSC-1

DY698831, DY698832, DW563762, DW538399, DW563761

MHC Class I

SAA

 

DY713846, DW536069

v-akt murine thymoma viral oncogene homolog 2

AKT2

 

DY734945, DY698459, GO058948

  1. Current abbreviation vs. older nomenclature is listed for each gene. All EST/cDNA sequences are from Genbank (n.i. denotes not identified). Additional comments: (a) Full-length sequencing of cDNA clones in-house (data not shown), (b) There is not sufficient EST/cDNA information to cover the entire open reading frame).