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Table 3 Classification of H. mustelae outer membrane proteins in relation to H. pylori OMPs

From: Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen

Gene Protein length (AA) Predicted MW (Da) N-terminal signal motif C-term motif FASTA Smith-Waterman identity* Detected in proteome
Hof-related OMPs       
HMU05640 456 51,804 A?MDF -YSF 32.1% in 479 aa overlap with H. pylori HofB (HP1083) Yes
HMU05650 451 51,181 A?VET -YGF 36.2% in 496 aa overlap with H. pylori HofF (HP0788) Yes
HMU10680 447 50,681 A?ASS -YFF 29.3% in 474 aa overlap with H. pylori HofE (HP0782) No
Hop-related OMP       
HMU04150 189 20,863 R?AYD? -YSF 34.7% in 170 aa overlap with HP0608 No
FecA-related OMP       
HMU11950 220 25,230 ? -ENP No significant homologues No
Unclassified OMPS       
HMU00140 232 26,345 G↓AGT -FLF No significant homologues No
HMU00150 252 28,374 A↓KED -IIF No significant homologues No
HMU00180 242 27,650 unclear -YVF No significant homologues No
HMU00690 208 22,360 A↓EAI -YTF No significant homologues No
HMU00810 135 15,492 A↓LVD -IRY No significant homologues No
HMU01060 316 34,414 E↓ATK -WYF 39.7% in 194 aa overlap with HomD (HP1453) No
HMU02490 469 51,412 A↓GKL -YNF No significant homologues No
HMU03240 394 32,308 A↓IEN -FYF 34.5 in 281 aa overlap with HP0726 No
HMU03280 282 25,467 unclear -KFF No significant homologues No
HMU03510 162 17,686 V↓SPE -VEF No significant homologues No
HMU04930 899 98,821 A↓YNP? -WVF 27.2% in 913 aa overlap with HomC (HP0373) No
HMU07910 873 98,252 A↓NEI -YHF 32.0% in 443 aa overlap with HofD (HP0487) No
HMU09930 565 62,131 V↓AGA -YHW 55% in 586 aa overlap with OmpP1 (HP0839) No
HMU13480 258 28,279 A↓TKG? -LIY 32.0% in 259 aa overlap with HH_1629 No
HMU13600 190 21,548 A↓MTL -EAK No significant homologues Yes
HMU13670 173 19,128 A↓KTC -NIK No significant homologues Yes
HMU13270 236 27,193 -NHL No significant homologues No
HMU00260 196 21,989 A↓HAR? -FVF No significant homologues No
HMU07990 343 39,155 A↓ENL -FAF 42.9% in 233 aa overlap with HP0694 No
HMU10040 167 18,839 -EGK 50.9% in 163 aa overlap with HP1546 No
HMU01230 232 24,626 A↓NTN -YKF 44.5% in 236 aa overlap with HH_0525 No
  1. † Predicted by SignalP 2.0 HMM with confidence, with low confidence (?), or not predicted (unclear).
  2. *Only homologies with E-value <10-10 presented.