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Table 1 Species of sequenced plant genomes used in this study.

From: The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants

Genomes

Species

Abbr.

Common Name

Clade

Ref.

Data Source

Arabidopsis thaliana

At

Thale cress

Dicot/Eurosid II

[65]

TAIR

Arabidopsis lyrata

Al

Lyrate rock cress

Dicot/Eurosid II

-

TAIR

Brachypodium distachyon

Bd

Purple false-brome

Monocot/Poales

[66]

BDB

Oryza sativa ssp. japonica

Os

Rice

Monocot/Poales

[67]

RGADB

Physcomitrella patens

Pp

Club moss

Bryophyte

[68]

JGI

Populus trichocarpa

Pt

Poplar

Dicot/Eurosid I

[69]

JGI

Ricinus communis

Rc

Castor bean

Dicot/Eurosid I

-

CVI

Selaginella moellendorffi

Sm

Spikemoss

Lycophyte

-

JGI

Vitis vinifera

Vv

Grapevine

Dicot (basal Rosid)

[70]

VGC

  1. List of the species used in this analysis including their abbreviation (abbr.), common name, phylogenetic classification (clade), and sources of data used. Analysis of all species utilized resources of the NCBI: National Center for Bioinformatics http://www.ncbi.nlm.nih.gov/. Additional web resources are listed below according to the abbreviations: PZ, Phytozome http://www.phytozome.net/); TAIR, the Arabidopsis Information Resource http://www.arabidopsis.org/; JGI, Joint Genome Initiative (Poplar: http://genome.jgi-psf.org/Poptr11/Poptr11.home.html; Physcomitrella: http://genome.jgi-psf.org/Phypa11/Phypa11.home.html; Selaginella: http://genome.jgi-psf.org/Selmo1/Selmo1.home.html); CVI, Craig Venter Insititute http://castorbean.jcvi.org/; BDB, Brachypodium database http://www.brachypodium.org/; RGADB, Rice Genome Annotation database http://rice.plantbiology.msu.edu/; VGC (Vitis Genome Consortium), The French-Italian Public Consortium for Grapevine Genome Characterization http://www.cns.fr/spip/vitis-vinifera-e.html.