Table 3 Characteristics of RPSA (pseudo)genes-repeats and transcription
From: Characterization of the ovine ribosomal protein SA gene and its pseudogenes
Gene | Interspersed repeats in gene | Flanking repeats/family/class | Transcription |
|---|---|---|---|
RPSAP1 | / | / | / |
RPSAP2 | / | 3': L2c/L2/LINE | Cerebrum, cerebellum, spleen, muscle, lymph node and duodenum |
RPSAP3 | / | 5': ERV3-16A3_I-int/ERVL/LTR 3': CHR-2A/tRNA-Glu/SINE | Cerebrum |
RPSAP4 | ART2A/RTE-BovB/SINE | 5': L1M3/L1/LINE 3': L1M3/L1/LINE and (CA)n/Simple_repeat and L1M3/L1/LINE | Cerebrum, cerebellum and spleen |
RPSAP5 | / | / | Cerebrum |
RPSAP6 | ART2A/RTE-BovB/SINE | 3': CHRL/tRNA-Glu/SINEand tRNA-Glu-GAA/tRNA | / |
RPSAP7 | Bov-tA1/BovA/SINE | 5': LTR16A2/ERVL/LTR 3': L1MEc/L1/LINE and L1M3/L1/LINE | / |
RPSAP8 | / | / | Cerebrum and cerebellum |
RPSAP9 | / | 5': MIR/SINE and MIR/SINE and L1M2/L1/LINE 3': L1M2/L1/LINE and (CATA)n/Simple_repeat | / |
RPSAP10 | / | / | / |
RPSAP11 | / | 5': Bov-tA2/BovA/SINE 3': L1M5/L1/LINE | Cerebrum, cerebellum, spleen, muscle, lymph node and duodenum |