Type of SSR repeat | Reference based assembly | De novo assembly of remaining reads | Total |
---|---|---|---|
Di | 1,267 (54) | 10,366 (1,487) | 11,633 (1,541) |
Tri | 551 (520) | 2,480 (1,748) | 3,031 (2,268) |
Tetra | 23 (19) | 397 (192) | 420 (211) |
Total | 1,841 (593) | 13,243 (3,427) | 15,084 (4,020) |