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Table 10 Differentially expressed genes in the category 'Gene expression'

From: Downregulation of genes with a function in axon outgrowth and synapse formation in motor neurones of the VEGFδ/δ mouse model of amyotrophic lateral sclerosis

Probe ID

Gene Title

Symbol

p value

FC

Regn

1437984

HLA-B-associated transcript 1A

Bat1a

0.0101

1.18

down

1436549

heterogeneous nuclear ribonucleoprotein A1

Hnrpa1

0.0354

1.30

down

1452712

heterogeneous nuclear ribonucleoprotein A3

Hnrpa3

0.0176

1.47

down

1423873

LSM1 homolog, U6 small nuclear RNA associated

Lsm1

0.0450

1.19

down

1434704

myeloid/lymphoid or mixed-lineage leukaemia 5

Mll5

0.0024

1.66

down

1424136

peptidyl prolyl isomerase H

Ppih

0.0123

1.40

down

1451909

PRP4 pre-mRNA processing factor 4 homolog B

Prpf4b

0.0366

1.38

down

1438420

RNA-binding region (RNP1, RRM) containing 2

Rnpc2

0.0004

1.76

down

1459765

splicing factor 1

Sf1

0.0405

1.34

down

1436898

splicing factor proline/glutamine rich

Sfpq

0.0101

1.88

down

1416151

splicing factor, arginine/serine-rich 3

Sfrs3

0.0305

1.24

down

1423130

splicing factor, arginine/serine-rich 5

Sfrs5

0.0494

1.59

down

1416721

splicing factor, arginine/serine-rich 6

Sfrs6

0.0232

1.26

down

1424033

splicing factor, arginine/serine-rich 7

Sfrs7

0.0264

1.30

down

1437180

small nuclear ribonucleoprotein 48

Snrnp48

0.0285

1.68

down

1437007

ubiquitin specific peptidase 39

Usp39

0.0047

1.33

down

1450845

basic leucine zipper and W2 domains 1

Bzw1

0.0269

1.27

up

1437841

cold shock domain containing C2, RNA binding

Csdc2

0.0130

1.43

up

1415920

cleavage stimulation factor, 3' pre-RNA subunit 2, tau

Cstf2t

0.0092

1.27

down

1437071

eukaryotic translation initiation factor 1A, Y-linked

Eif1ay

0.0281

1.21

down

1434538

eukaryotic translation initiation factor 2B, subunit 2 beta

Eif2b2

0.0149

1.23

down

1454664

eukaryotic translation initiation factor 5

Eif5

0.0439

1.12

down

1424252

heterogeneous nuclear ribonucleoprotein D-like

Hnrpdl

0.0046

2.20

down

1415911

imprinted and ancient

Impact

0.0009

1.47

down

1451125

poly(A) binding protein interacting protein 2B

Paip2b

0.0327

1.14

down

1424216

poly (A) polymerase alpha

Papola

0.0286

1.55

down

1427544

poly (A) polymerase alpha

Papola

0.0305

1.22

down

1436586

ribosomal protein S14

Rps14

0.0321

1.25

down

1416065

ankyrin repeat domain 10

Ankrd10

0.0494

1.27

down

1435307

ankyrin repeat domain 34B

Ankrd34B

0.0154

5.84

down

1452342

amyloid beta (A4) precursor protein-binding, family B, member 2

Apbb2

0.0415

1.21

down

1455647

androgen receptor

Ar

0.0248

1.30

down

1420985

ash1 (absent, small, or homeotic)-like

Ash1l

0.0413

1.23

down

1450072

ash1 (absent, small, or homeotic)-like

Ash1l

0.0416

1.22

down

1449947

AT motif binding factor 1

Atbf1

0.0213

1.49

down

1438992

activating transcription factor 4

Atf4

0.0069

1.35

down

1418271

basic helix-loop-helix domain containing, class B5

Bhlhb5

0.0456

1.69

down

1452850

breast cancer metastasis-suppressor 1-like

Brms1l

0.0371

1.28

down

1435445

cyclin T2

Ccnt2

0.0159

1.52

down

1420497

CCAAT/enhancer binding protein zeta

Cebpz

0.0435

1.28

down

1454641

CGG triplet repeat binding protein 1

Cggbp1

0.0063

1.42

down

1434002

checkpoint supressor 1

Ches1

0.0452

1.37

down

1438255

checkpoint supressor 1

Ches1

0.0459

1.41

down

1436980

CCR4-NOT transcription complex, subunit 2

Cnot2

0.0089

1.36

down

1456576

CCR4-NOT transcription complex, subunit 2

Cnot2

0.0046

1.31

down

1437982

COX15 homolog, cytochrome c oxidase assembly protein

Cox15

0.0406

1.14

up

1452901

cAMP responsive element binding protein 1

Creb1

0.0148

1.44

down

1436983

CREB binding protein

Crebbp

0.0428

1.23

down

1452857

CREB/ATF bZIP transcription factor

Crebzf

0.0245

1.45

down

1454931

CREBBP/EP300 inhibitory protein 2

Cri2

0.0384

1.24

down

1429618

cylindromatosis (turban tumor syndrome)

Cyld

0.0025

1.55

down

1448234

DnaJ (Hsp40) homolog, subfamily B, member 6

Dnajb6

0.0214

1.23

down

1459805

dihydrouridine synthase 3-like

Dus3l

0.0103

1.39

down

1418850

enhancer of polycomb homolog 1

Epc1

0.0133

1.23

down

1455267

estrogen-related receptor gamma

Esrrg

0.0026

1.50

down

1456615

fetal Alzheimer antigen

Falz

0.0130

1.33

down

1423709

phenylalanine-tRNA synthetase-like, beta subunit

Farslb

0.0270

1.34

down

1459861

F-box and leucine-rich repeat protein 10

Fbxl10

0.0052

1.32

down

1428890

fem-1 homolog c

Fem1c

0.0498

1.22

down

1417113

germ cell-less homolog

Gcl

0.0341

1.31

down

1424296

glutamate-cysteine ligase, catalytic subunit

Gclc

0.0143

1.38

down

1448381

G elongation factor 1

Gfm1

0.0045

1.35

down

1437163

general transcription factor II H, polypeptide 4

Gtf2h4

0.0446

1.17

up

1425628

transcription factor TFII-I-alpha

Gtf2i

0.0296

1.32

down

1416176

high mobility group box 1

Hmgb1

0.0077

1.29

down

1455626

homeo box A9

Hoxa9

0.0190

1.61

down

1454760

HIV TAT specific factor 1

Htatsf1

0.0337

1.28

down

1460669

interleukin enhancer binding factor 3

Ilf3

0.0213

1.27

down

1455762

kinase D-interacting substrate 220

Kidins220

0.0152

1.26

down

1456341

Kruppel-like factor 9

Klf9

0.0080

1.38

down

1455214

microphthalmia-associated transcription factor

Mitf

0.0081

1.30

down

1435547

MKL/myocardin-like 2

Mkl2

0.0335

1.35

down

1443500

myeloid/lymphoid or mixed lineage-leukemia translocation to 10

Mllt10

0.0080

1.16

up

1457632

myeloid ecotropic viral integration site-related gene 1

Mrg1

0.0333

2.40

down

1424204

mitochondrial ribosomal protein L13

Mrpl13

0.0101

1.24

down

1434971

mitochondrial ribosomal protein L15

Mrpl15

0.0463

1.13

down

1440989

mitochondrial ribosomal protein L35

Mrpl15

0.0041

1.35

down

1456109

mitochondrial ribosomal protein S15

Mrps15

0.0311

1.30

down

1452608

c-myc binding protein

Mycbp

0.0004

1.47

down

1423201

nuclear receptor co-repressor 1

Ncor1

0.0107

1.26

down

1447693

Neogenin

Neo1

0.0410

1.18

down

1448963

nuclear transcription factor-Y gamma

Nfyc

0.0215

1.19

down

1434398

NF-kappaB repressing factor

Nkrf

0.0074

1.71

down

1419112

nemo like kinase

Nlk

0.0478

1.27

down

1416958

nuclear receptor subfamily 1, group D, member 2

Nr1d2

0.0079

1.57

down

1454851

nuclear receptor subfamily 2, group C, member 2

Nr2c2

0.0491

1.15

down

1448493

polyadenylate-binding protein-interacting protein 2

Paip2

0.0261

1.42

down

1426878

polybromo1

Pbrm1

0.0033

1.22

down

1427266

polybromo1

Pbrm1

0.0046

1.31

down

1417493

polycomb group ring finger 4

Pcgf4

0.0091

1.24

down

1453271

PHD finger protein 14

Phf14

0.0151

1.52

down

1456395

peroxisome proliferative activated receptor, γ, coactivator 1a

Ppargc1a

0.0001

1.66

down

1456037

prolactin regulatory element binding

Preb

0.0147

1.41

down

1428254

purine rich element binding protein B

Purb

0.0102

1.29

down

1436979

RNA binding motif protein 14

Rbm14

0.0106

1.19

down

1422660

RNA binding motif protein 3

Rbm3

0.0398

1.54

up

1443922

REST corepressor 3 (Rcor3), mRNA

Rcor3

0.0495

1.32

up

1434521

regulatory factor X domain containing 2 homolog

Rfxdc2

0.0103

1.39

down

1438505

ribonuclease III, nuclear

Rnasen

0.0341

1.14

down

1426660

ribosomal protein L23a

Rpl23a

0.0332

1.26

down

1437975

ribosomal protein L23a

Rpl23a

0.0488

1.18

down

1436046

ribosomal protein L29

Rpl29

0.0144

1.15

down

1448846

ribosomal protein L29

Rpl29

0.0314

1.20

down

1454627

ribosomal protein L29

Rpl29

0.0113

1.38

down

1455348

ribosomal protein L29

Rpl29

0.0203

1.21

down

1420381

ribosomal protein L31

Rpl31

0.0134

1.40

down

1438986

ribosomal protein S17

Rps17

0.0496

1.24

down

1430288

ribosomal protein S21

Rps21

0.0471

1.19

down

1415876

ribosomal protein S26

Rps26

0.0311

1.33

down

1423763

ribosomal protein S28

Rps28

0.0406

1.15

down

1435816

ribosomal protein S6

Rps6

0.0011

1.15

up

1448584

arginine/serine-rich coiled-coil 1

Rsrc1

0.0148

1.25

down

1428219

RING1 and YY1 binding protein

Rybp

0.0223

1.46

down

1416008

special AT-rich sequence binding protein 1

Satb1

0.0242

1.28

down

1417892

sirtuin 3 (silent mating type information regulation 2, homolog) 3

Sirt3

0.0200

1.27

down

1426668

solute carrier family 30 (zinc transporter), member 9

Slc30a9

0.0325

1.34

down

1429624

SAFB-like transcription modulator

Sltm

0.0193

1.21

down

1436703

small nuclear RNA activating complex, polypeptide 2

Snapc2

0.0432

1.14

up

1444531

Superoxide dismutase 2, mitochondrial

Sod2

0.0254

1.21

up

1451542

single-stranded DNA binding protein 2

Ssbp2

0.0262

1.40

down

1434238

RNA polymerase II, TATA box binding protein-associated factor

Taf2

0.0063

1.54

down

1436318

TAR DNA binding protein

Tardbp

0.0104

1.60

down

1452593

transcription elongation factor B (SIII), polypeptide 1

Tceb1

0.0360

1.15

up

1421147

telomeric repeat binding factor 2

Terf2

0.0355

1.24

down

1460545

thyroid hormone receptor associated protein 3

Thrap3

0.0201

1.11

down

1416812

cytotoxic granule-associated RNA binding protein 1

Tia1

0.0287

1.47

down

1416814

cytotoxic granule-associated RNA binding protein 1

Tia1

0.0115

1.50

down

1434898

trinucleotide repeat containing 6a

Tnrc6a

0.0004

1.57

down

1434899

trinucleotide repeat containing 6a

Tnrc6a

0.0039

1.43

down

1438376

tripartite motif protein 27

Trim27

0.0415

1.15

down

1426954

tripartite motif protein 33

Trim33

0.0320

1.27

down

1447780

Tu translation elongation factor, mitochondrial

Tufm

0.0433

1.16

down

1435389

ubiquitin A-52 residue ribosomal protein fusion product 1

Uba52

0.0105

1.35

down

1455222

upstream binding protein 1

Ubp1

0.0403

1.35

down

1427097

WW domain containing E3 ubiquitin protein ligase 1

Wwp1

0.0464

1.25

down

1420011

X-box binding protein 1

Xbp1

0.0167

1.24

down

1437223

X-box binding protein 1

Xbp1

0.0496

1.33

down

1422569

YY1 transcription factor

Yy1

0.0313

1.35

down

1457285

zinc finger protein 187

Zfp187

0.0332

1.20

down

1426895

zinc finger protein 191

Zfp191

0.0081

1.18

down

1456824

zinc finger protein 612

Zfp612

0.0388

1.16

down

1437873

zinc finger protein 799

Zfp799

0.0078

1.48

down

1448875

zinc fingers and homeoboxes protein 1

Zhx1

0.0471

1.18

down

1426531

zinc finger, MYND domain containing 11

Zmynd11

0.0005

1.32

down

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BMC Genomics

ISSN: 1471-2164

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