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Table 4 Summary of haplogroups distinguished by PCR amplification

From: Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes

  Contig linkage primer pairs* Genes
Haplogroups** CW_02 CW_19 LD_12 LD_24 LD_29 LD_30 CW- orf307 atp6-orf79 orf288
A - - - - - - - - +
B - - - - - - - - -
C - + - - - - - - -
D - - + - + + - + -
E - - - - + + - - -
F - + - - - - - - +
G - - - - - + - - +
H - - + - - + - + -
I - - - - + + - - +
J - - + - + - - + -
K - + - - + + - - +
L - - - - + + - + -
CW + + - - - - + - -
LD - - + + + + - + +
  1. *See Additional File 8 for details of the primers
  2. **Full details of haplogroups are present in Additional file 5.
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BMC Genomics

ISSN: 1471-2164

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