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Table 4 Summary of haplogroups distinguished by PCR amplification

From: Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes

 

Contig linkage primer pairs*

Genes

Haplogroups**

CW_02

CW_19

LD_12

LD_24

LD_29

LD_30

CW- orf307

atp6-orf79

orf288

A

-

-

-

-

-

-

-

-

+

B

-

-

-

-

-

-

-

-

-

C

-

+

-

-

-

-

-

-

-

D

-

-

+

-

+

+

-

+

-

E

-

-

-

-

+

+

-

-

-

F

-

+

-

-

-

-

-

-

+

G

-

-

-

-

-

+

-

-

+

H

-

-

+

-

-

+

-

+

-

I

-

-

-

-

+

+

-

-

+

J

-

-

+

-

+

-

-

+

-

K

-

+

-

-

+

+

-

-

+

L

-

-

-

-

+

+

-

+

-

CW

+

+

-

-

-

-

+

-

-

LD

-

-

+

+

+

+

-

+

+

  1. *See Additional File 8 for details of the primers
  2. **Full details of haplogroups are present in Additional file 5.
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BMC Genomics

ISSN: 1471-2164

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