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Table 1 Micro-Tom tissues used for RNA preparation

From: Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics

Organ Treatment Tissue Condition Library
Leaf CMV(strain TN) and satellite RNA Inoculated leaves, systemic leaves 16 dpi (21-day old) LEFL1
  ToMV (strain Lta1, L11A, L2a, Ltb1, LJB) Inoculated leaves, systemic leaves 7, 14 dpi (28, 35-day old)  
  Non-pathogenic Alternaria alternata Inoculated leaves 6, 24 hpi (5-week old)  
  Alternaria alternate f. sp. lycopersici (As-27) Inoculated leaves 6, 24 hpi (5-week old)  
  Corynespora cassiicola (isolated from tomato and cucumber) Inoculated leaves 6, 24 hpi (3-week old)  
  Cladosporium fulvum (strain 210, 211, 217) Inoculated leaves 5 dpi (40-day old)  
  Fusarium oxysporum f. sp. lycopersici race 1 and 2 Leaves Inoculated to root, 7 dpi (4-week old)  
  Non-pathogenic Fusarium oxysporum Leaves Inoculated to root, 7 dpi (4-week old)  
  Pseudomonas syringae pv. tomato (DC3000 wild type), pv tabaci isolate 6605 (wild type, ΔfliC, ΔfliD) Spray-inoculated leaves 24 hpi (6-week old)  
  Flagellin from P. syringae pv. tabaci isolate 6605, fgl22 Sprayed leaves 3 hps (6-week old)  
  Probenazole (100 μg/ml) Sprayed leaves 4 dps (4-week old)  
  Validamycin A (100 μg/ml) Sprayed leaves 4 dps (4-week old)  
  Acibenzolar-S-methyl (100 μg/ml) Sprayed leaves 4 dps (4-week old)  
  Validoxylamine A (100 μg/ml) Sprayed leaves 4 dps (4-week old)  
  Salicilic acid (0.5 mM) Sprayed leaves 2 dps (4-week old)  
  Methyl jasmonic acid (50 μM) Sprayed leaves 2 dps (4-week old)  
Fruit Mature green Pericarp 40 daa, year 2003, 2004 FC/LEFL2
  Breaker Pericarp 42 daa, year 2003, 2004  
  Turning Pericarp 48 daa, year 2003, 2004  
  Red ripe Pericarp 50 daa, year 2003, 2004  
Root Roots from plants without flower Roots 6, 10-week old LEFL3
  Roots from flowered plants Roots 10, 12- week old  
  Fusarium oxysporum race 2 Roots 1, 7, 14, 21 dpi, 4- to 11-week old  
  1. Abbreviations: dpi, days post inoculation; hpi, hours post inoculation; hps, hour post spray; dps, days post spray; daa, days after anthesis. More detailed dexcription of the samples is available as Additional file 1.
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