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Table 1 Micro-Tom tissues used for RNA preparation

From: Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics

Organ

Treatment

Tissue

Condition

Library

Leaf

CMV(strain TN) and satellite RNA

Inoculated leaves, systemic leaves

16 dpi (21-day old)

LEFL1

 

ToMV (strain Lta1, L11A, L2a, Ltb1, LJB)

Inoculated leaves, systemic leaves

7, 14 dpi (28, 35-day old)

 
 

Non-pathogenic Alternaria alternata

Inoculated leaves

6, 24 hpi (5-week old)

 
 

Alternaria alternate f. sp. lycopersici (As-27)

Inoculated leaves

6, 24 hpi (5-week old)

 
 

Corynespora cassiicola (isolated from tomato and cucumber)

Inoculated leaves

6, 24 hpi (3-week old)

 
 

Cladosporium fulvum (strain 210, 211, 217)

Inoculated leaves

5 dpi (40-day old)

 
 

Fusarium oxysporum f. sp. lycopersici race 1 and 2

Leaves

Inoculated to root, 7 dpi (4-week old)

 
 

Non-pathogenic Fusarium oxysporum

Leaves

Inoculated to root, 7 dpi (4-week old)

 
 

Pseudomonas syringae pv. tomato (DC3000 wild type), pv tabaci isolate 6605 (wild type, ΔfliC, ΔfliD)

Spray-inoculated leaves

24 hpi (6-week old)

 
 

Flagellin from P. syringae pv. tabaci isolate 6605, fgl22

Sprayed leaves

3 hps (6-week old)

 
 

Probenazole (100 μg/ml)

Sprayed leaves

4 dps (4-week old)

 
 

Validamycin A (100 μg/ml)

Sprayed leaves

4 dps (4-week old)

 
 

Acibenzolar-S-methyl (100 μg/ml)

Sprayed leaves

4 dps (4-week old)

 
 

Validoxylamine A (100 μg/ml)

Sprayed leaves

4 dps (4-week old)

 
 

Salicilic acid (0.5 mM)

Sprayed leaves

2 dps (4-week old)

 
 

Methyl jasmonic acid (50 μM)

Sprayed leaves

2 dps (4-week old)

 

Fruit

Mature green

Pericarp

40 daa, year 2003, 2004

FC/LEFL2

 

Breaker

Pericarp

42 daa, year 2003, 2004

 
 

Turning

Pericarp

48 daa, year 2003, 2004

 
 

Red ripe

Pericarp

50 daa, year 2003, 2004

 

Root

Roots from plants without flower

Roots

6, 10-week old

LEFL3

 

Roots from flowered plants

Roots

10, 12- week old

 
 

Fusarium oxysporum race 2

Roots

1, 7, 14, 21 dpi, 4- to 11-week old

 
  1. Abbreviations: dpi, days post inoculation; hpi, hours post inoculation; hps, hour post spray; dps, days post spray; daa, days after anthesis. More detailed dexcription of the samples is available as Additional file 1.