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Table 4 Transcription factors found in the nrFLcDNAs

From: Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics

Family IPR entry Description of IPR entry No. of tomato nrFLcDNAs
G2-like IPR006447 Myb-like, SHAQKYF class 52a
MYB IPR015495 Myb transcription factor 50a
Homeobox IPR001356 Homeobox 40
C2H2 IPR007087 Zinc finger, C2H2-type 31
bHLH IPR011598 Helix-loop-helix DNA-binding 22
CCAAT-HAP5, HAP3, and HAP2 IPR003958 Transcription factor CBF/NF-Y/archaeal histone 19
PHD IPR001965 Zinc finger, PHD-type 18
AP2-EREBP IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding 18
WRKY IPR003657 DNA-binding WRKY 18
bZIP IPR011616 bZIP transcription factor, bZIP-1 17
HSF IPR000232 Heat shock factor (HSF)-type, DNA-binding 15
C3H IPR000571 Zinc finger, CCCH-type 13
MADS IPR002100 Transcription factor, MADS-box 11
MYB-related IPR010588 Myb-related protein P, C-terminal 11
C2C2-YABBY IPR006780 YABBY protein 11b
ARID IPR009071 High mobility group box 11b
NAC IPR003441 No apical meristem (NAM) protein 10
TCP IPR005333 Transcription factor, TCP 8
GRAS IPR005202 GRAS transcription factor 7
C2C2-GATA IPR000679 Zinc finger, GATA-type 6
ABI3VP1 IPR003340 Transcriptional factor B3 6
EIL IPR006957 Ethylene insensitive 3 3
BBR/BPC IPR010409 GAGA binding-like 2
TUB IPR000007 Tubby, C-terminal 2
C2C2-Dof IPR003851 Zinc finger, Dof-type 2
C2C2-CO-like IPR000315 Zinc finger, B-box, "IPR002926 Zinc finger, CONSTANS-type" was deleted from IPR entry. 2
ZF-HD IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region 2
GeBP IPR007592 Protein of unknown function DUF573 2
ARR-B IPR001789 Response regulator receiver 2
NLP IPR003035 Plant regulator RWP-RK 2
BZR IPR008540 BZR1, transcriptional repressor 1
JUMONJI IPR013129 Transcription factor jumonji 1
ZIM IPR007853 Zinc finger, Zim17-type 1
Whirly IPR009044 ssDNA-binding transcriptional regulator 1
  1. aMember nrFLcDNAs of MYB were completely overlapped with those of G2-like. bMember nrFLcDNAs of C2C2-YABBY and ARID completely overlapped.