Table 4 Transcription factors found in the nrFLcDNAs
Family | IPR entry | Description of IPR entry | No. of tomato nrFLcDNAs |
|---|---|---|---|
G2-like | IPR006447 | Myb-like, SHAQKYF class | 52a |
MYB | IPR015495 | Myb transcription factor | 50a |
Homeobox | IPR001356 | Homeobox | 40 |
C2H2 | IPR007087 | Zinc finger, C2H2-type | 31 |
bHLH | IPR011598 | Helix-loop-helix DNA-binding | 22 |
CCAAT-HAP5, HAP3, and HAP2 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone | 19 |
PHD | IPR001965 | Zinc finger, PHD-type | 18 |
AP2-EREBP | IPR001471 | Pathogenesis-related transcriptional factor and ERF, DNA-binding | 18 |
WRKY | IPR003657 | DNA-binding WRKY | 18 |
bZIP | IPR011616 | bZIP transcription factor, bZIP-1 | 17 |
HSF | IPR000232 | Heat shock factor (HSF)-type, DNA-binding | 15 |
C3H | IPR000571 | Zinc finger, CCCH-type | 13 |
MADS | IPR002100 | Transcription factor, MADS-box | 11 |
MYB-related | IPR010588 | Myb-related protein P, C-terminal | 11 |
C2C2-YABBY | IPR006780 | YABBY protein | 11b |
ARID | IPR009071 | High mobility group box | 11b |
NAC | IPR003441 | No apical meristem (NAM) protein | 10 |
TCP | IPR005333 | Transcription factor, TCP | 8 |
GRAS | IPR005202 | GRAS transcription factor | 7 |
C2C2-GATA | IPR000679 | Zinc finger, GATA-type | 6 |
ABI3VP1 | IPR003340 | Transcriptional factor B3 | 6 |
EIL | IPR006957 | Ethylene insensitive 3 | 3 |
BBR/BPC | IPR010409 | GAGA binding-like | 2 |
TUB | IPR000007 | Tubby, C-terminal | 2 |
C2C2-Dof | IPR003851 | Zinc finger, Dof-type | 2 |
C2C2-CO-like | IPR000315 | Zinc finger, B-box, "IPR002926 Zinc finger, CONSTANS-type" was deleted from IPR entry. | 2 |
ZF-HD | IPR006456 | ZF-HD homeobox protein Cys/His-rich dimerisation region | 2 |
GeBP | IPR007592 | Protein of unknown function DUF573 | 2 |
ARR-B | IPR001789 | Response regulator receiver | 2 |
NLP | IPR003035 | Plant regulator RWP-RK | 2 |
BZR | IPR008540 | BZR1, transcriptional repressor | 1 |
JUMONJI | IPR013129 | Transcription factor jumonji | 1 |
ZIM | IPR007853 | Zinc finger, Zim17-type | 1 |
Whirly | IPR009044 | ssDNA-binding transcriptional regulator | 1 |