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Table 2 Sequences of allele specific primers used in this study.

From: g you The direct determination of haplotypes from extended regions of genomic DNA

Primer

FORWARD

Position in Reference sequence

F1 c/t

GARMGAGTGTCRTTTCTY

13 - 30

F2 c/t

GAGTGTCRTTTCTYAAAY

17- 34

F3 g/c

TTTCTYAAAYGGGACS

25 - 40

F4 ac

GGACSGAGA GGGTGCGGC

35 - 53

F5 ct

GGACSGAGC GGGTGCGGT

35 - 53

F6 a/t

GACSGAGMGGGTGCGGYW

36 - 54

F6 a/c

GGGTGCGGYWSCTGGAM

45 - 61

F7 a/t/c

CTGGAMAGATACTWCH

56 - 71

F8 a/t

HMTAAYGGAGAAGAGW

71 - 86

F9 a/t/c

HMTAAYGGAGAAGAGWH

71 - 87

F10 a/g

GACTGGGGCGAGTWYCGR

104 - 121

F11 g/c

TGGAACAGCCAGAAGGGAS

158 - 176

 

REVERSE

 

R1 g/a/t

CTTCTGGCTGTTCCAD

172 - 157

R2 a/g

CTTCTGGCTGTTCCADTR

172 - 155

R3 c/t

CTGGCTGTTCCADTRCTY

169 -152

R4 ct

CTGTTCCADTRGTYRGCKCT

165 - 146

R5 tc

CTGTTCCADTRGTYRGCKTC

165 - 146

R6 g/a/c

CTGCAGTACGTGTCCACV

216 - 199

  1. Allele specificity is conferred by the bases in bold upper case. All primer sequences are shown 5'-3'.