Table 2 The 20 most common Pfam domains
From: The Alveolate Perkinsus marinus: Biological Insights from EST Gene Discovery
Description of Pfam domain | Pfam accession | No. of P. marinus ORFs |
|---|---|---|
Transmembrane amino acid transporter protein | PF01490 | 27 |
ABC transporter | PF00005 | 26 |
ADP-ribosylation factor family | PF00025 | 30 |
Helicase conserved C-terminal domain | PF00271 | 23 |
Mitochondrial carrier protein | PF00153 | 22 |
Papain family cysteine peptidase | PF00112 | 11 |
Protein kinase domain | PF00069 | 51 |
Proteasome A-type and B-type | PF00227 | 20 |
RNA recognition motif 1 | PF00076 | 78 |
RNA recognition motif 2 | PF04059 | 18 |
Sugar (and other) transporter | PF00083 | 15 |
Tetra tricopeptide repeat | PF00515 | 20 |
tRNA synthetase | PF00133 | 11 |
WD domain, G-beta repeat | PF00400 | 36 |
Zinc finger C3HC4 type | PF00097 | 77 |
Zinc finger C8C5C3H type | PF00642 | 43 |
ATPase family associated with various cellular activities | PF00004 | 16 |
DEAD/DEAH box helicase | PF00270 | 12 |
Dna J domain: associated with hsp 70 heat-shock protein | PF00226 | 35 |
Cytochrome b5-like Heme/Steroid binding domain | PF00173 | 12 |