From: Identification of copy number variations and common deletion polymorphisms in cattle
CNV region | Length (bp) | No. of CNVs | Frequency | No. of genes | Genes |
---|---|---|---|---|---|
chr15:1836732-2039483 | 202,751 | 35 | 0.132 | 0 | Â |
chr5:11483310-11889745 | 406,435 | 28 | 0.106 | 0 | Â |
chr17:75520590-76487768 | 967,178 | 24 | 0.091 | 21 | ARVCF, C17H22orf25, CDC45L, CLDN5, COMT, DGCR14, DGCR2, DGCR8, FAM128B, LOC515651, MED15, PI4KA, RANBP1, SEPT5, SERPIND1, SLC25A1, SNAP29, THAP7, TUBA3E, TXNRD2, UFD1L |
chr17:15002419-15372017 | 369,598 | 22 | 0.083 | 1 | SMARCA5 |
chr13:54700988-55222116 | 521,128 | 16 | 0.060 | 12 | ARFGAP1, ARFRP1, C13H20ORF11, C13H20orf149, C13H20orf195, DIDO1, EEF1A2, RTEL, SLC17A9, STMN3, TNFRSF6B, ZGPAT |
chr20:31559229-31832019 | 272,790 | 15 | 0.057 | 0 | Â |
chr3:36163190-36338393 | 175,203 | 13 | 0.049 | 2 | CSF1,GSTM3 |
chr4:10009287-10665698 | 656,411 | 13 | 0.049 | 3 | GATAD1, LOC524650, MGC148329 |
chr5:102164053-102261488 | 97,435 | 10 | 0.038 | 2 | GUCY2C, PLBD1 |
chr19:12442436-12611334 | 168,898 | 10 | 0.038 | 0 | Â |
chr11:109101259-109497448 | 396,189 | 9 | 0.034 | 10 | C11H9ORF142, C8G, CLIC3, EDF1, KIAA1984, MAMDC4, PARF, PHPT1, PTGDS, TMEM141 |
chr18:10398490-10604602 | 206,112 | 9 | 0.034 | 1 | MGC140224 |
chr18:48593919-48725107 | 131,188 | 9 | 0.034 | 6 | EID2, MED29, RPS16, SUPT5H, TIMM50, ZFP36 |
chr20:46603190-46767627 | 164,437 | 9 | 0.034 | 0 | Â |
chr25:42346692-42719563 | 372,871 | 9 | 0.034 | 3 | CARD11, CHST12, LFNG |
chr1:40050487-40150878 | 100,391 | 8 | 0.030 | 0 | Â |
chr5:123127110-123347200 | 220,090 | 8 | 0.030 | 1 | PPARA |
chr7:4650135-5033417 | 383,282 | 8 | 0.030 | 11 | CIST1, IFI30, ISYNA1, JUND, LRRC25, LSM4, MPV17L2, PGPEP1, PIK3R2, RAB3A, SSBP4 |
chr17:24499559-24727631 | 228,072 | 8 | 0.030 | 0 | Â |
chr20:51402609-51459233 | 56,624 | 8 | 0.030 | 0 | Â |
chr6:56495043-56634157 | 139,114 | 7 | 0.026 | 0 | Â |
chr10:90756777-90887327 | 130,550 | 7 | 0.026 | 0 | Â |