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Table 2 Summary of common copy number variation regions in Bos taurus coreanae (freq. >2.5%)

From: Identification of copy number variations and common deletion polymorphisms in cattle

CNV region Length (bp) No. of CNVs Frequency No. of genes Genes
chr15:1836732-2039483 202,751 35 0.132 0  
chr5:11483310-11889745 406,435 28 0.106 0  
chr17:75520590-76487768 967,178 24 0.091 21 ARVCF, C17H22orf25, CDC45L, CLDN5, COMT, DGCR14, DGCR2, DGCR8, FAM128B, LOC515651, MED15, PI4KA, RANBP1, SEPT5, SERPIND1, SLC25A1, SNAP29, THAP7, TUBA3E, TXNRD2, UFD1L
chr17:15002419-15372017 369,598 22 0.083 1 SMARCA5
chr13:54700988-55222116 521,128 16 0.060 12 ARFGAP1, ARFRP1, C13H20ORF11, C13H20orf149, C13H20orf195, DIDO1, EEF1A2, RTEL, SLC17A9, STMN3, TNFRSF6B, ZGPAT
chr20:31559229-31832019 272,790 15 0.057 0  
chr3:36163190-36338393 175,203 13 0.049 2 CSF1,GSTM3
chr4:10009287-10665698 656,411 13 0.049 3 GATAD1, LOC524650, MGC148329
chr5:102164053-102261488 97,435 10 0.038 2 GUCY2C, PLBD1
chr19:12442436-12611334 168,898 10 0.038 0  
chr11:109101259-109497448 396,189 9 0.034 10 C11H9ORF142, C8G, CLIC3, EDF1, KIAA1984, MAMDC4, PARF, PHPT1, PTGDS, TMEM141
chr18:10398490-10604602 206,112 9 0.034 1 MGC140224
chr18:48593919-48725107 131,188 9 0.034 6 EID2, MED29, RPS16, SUPT5H, TIMM50, ZFP36
chr20:46603190-46767627 164,437 9 0.034 0  
chr25:42346692-42719563 372,871 9 0.034 3 CARD11, CHST12, LFNG
chr1:40050487-40150878 100,391 8 0.030 0  
chr5:123127110-123347200 220,090 8 0.030 1 PPARA
chr7:4650135-5033417 383,282 8 0.030 11 CIST1, IFI30, ISYNA1, JUND, LRRC25, LSM4, MPV17L2, PGPEP1, PIK3R2, RAB3A, SSBP4
chr17:24499559-24727631 228,072 8 0.030 0  
chr20:51402609-51459233 56,624 8 0.030 0  
chr6:56495043-56634157 139,114 7 0.026 0  
chr10:90756777-90887327 130,550 7 0.026 0