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Table 1 Overview of sequencing results.

From: Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa

 

genome coverage

sequence variations

Strain

median read

deptha

missing genesb

nonsynonymous

substitution dNc

synonymous

substitution

dS c

Psae1152

47.6

226

2.47

20.00

Psae1747

41.6

170

1.45

10.55

Psae2136

63.8

170

1.53

10.93

Psae2162

43.8

230

2.39

19.67

PADJ-1

36.7

61

3.26

11.40

PADJ-2

38.2

122

3.36

11.33

PADJ-3

30.8

93

3.13

11.07

meand

34.6

87

3.22

11.25

  1. a Median value over all genes
  2. b Normalized read depth ≤ 0.25
  3. c Mean substitution rate per 1000 sites
  4. d Data set including all 36 strains obtained by merging short reads of the three PADJ sets.