Table 2 General features of the E. faecium genomes.
Features | E980 | E1039 | E1071 | E1162 | E1636 | E1679 | U0317 |
|---|---|---|---|---|---|---|---|
Coverage of sequence | 19.1× | 24.4× | 19.9× | 20.0× | 19.3× | 16.7× | 17.0× |
Average sequence read length | 240.0 | 246.0 | 254.3 | 256.7 | 237.6 | 239.8 | 235.6 |
Number of contigs | 131 | 124 | 96 | 139 | 223 | 340 | 227 |
Number of assembled bases | 2792626 | 2503230 | 2700770 | 2711396 | 2838335 | 2928184 | 2893029 |
Contig N50 (bp) | 52826 | 46767 | 91386 | 50721 | 38772 | 20200 | 31583 |
Largest contig (bp) | 145466 | 151666 | 228099 | 153370 | 152616 | 150593 | 162623 |
G + C content, % | 38.1 | 38.0 | 37.9 | 38.0 | 37.8 | 37.7 | 37.7 |
Protein coding DNA, % | 86.4 | 85.0 | 85.9 | 86.3 | 85.9 | 85.7 | 85.8 |
Number of predicted CDS | 2869 | 2587 | 2714 | 2694 | 2940 | 3043 | 2965 |
Average gene length | 841 | 822 | 855 | 869 | 830 | 824 | 837 |
Bases with quality score <20, % | 0.051 | 0.035 | 0.027 | 0.034 | 0.104 | 0.196 | 0.155 |