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Table 5 List of the important KEGG pathways more than 3 miRNA-target genes affiliated

From: Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type

KEGGa pathway

Genesb

Gene ID

Best E-value

Benzoate degradation

5

EY732960, EY732985, EY748192, TC18796, TC9807

1.00E-125

Carbon fixation

8

EY665527, EY667061, TC11997, TC13950, TC17473, TC24400, EY722705, TC11997

1.00E-128

Ethylbenzene degradation

5

EY732960, EY732985, EY748192, TC18796, TC9807

1.00E-156

Fatty acid metabolism

5

EY732960, EY732985, EY748192, TC18796, TC9807

1.00E-156

Flavonoid biosynthesis

6

EY697662, EY742573, TC14650, TC3846, TC14650, TC3846

6.00E-93

Geraniol degradation

5

EY732960, EY732985, EY748192, TC18796, TC9807

1.00E-156

Glyoxylate and dicarboxylate metabolism

3

EY667061, EY708354, EY722705

2.00E-86

Linolenic acid metabolism

5

EY732960, EY732985, EY748192, TC18796, TC9807

1.00E-122

Methane metabolism

3

EY697129, EY724821, TC20228

1.00E-68

Pentose phosphate pathway

3

TC13950, TC17473, TC15377

5.00E-58

Phenylalanine metabolism

4

EY664657, EY697129, NP13097244, TC20228

1.00E-167

Photosynthesis - antenna proteins

5

EY672715, EY682256, EY701112, EY701374, EY756276

1.00E-102

Ribosome

3

EY681302, EY752996, TC18634

2.00E-91

Terpenoid biosynthesis

3

EY730974, TC363, EY752486

6.00E-84

Ubiquitin mediated proteolysis

3

EY656660, EY665372, EY752038

2.00E-83

Valine leucine and isoleucine degradation

6

EY732985, EY732960, EY748192, TC18796, TC9807, TC5927

1.00E-156

  1. aKEGG = Kyoto Encyclopedia of Genes and Genomes.
  2. bThe putative target genes of miRNA genes which differentially expressed significant at 0.05 level between the mutant and wild type