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Table 4 Putative functions of differentially expressed genes

From: Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum

Contig name Gene product Putative function Log mean fold changes
    AL3T/AL1T AL9T/AL1T Tox/Nontox
Higher expressed in toxic strains     
Amin_34h03r putative small nuclear ribonucleoprotein polypeptide E gene expression 1.7 2.4 2.0
Amin_36k19f translation elongation factor-like protein gene expression 24.4 25.8 25.1
Amin_44h09f glycyl-tRNA synthetase gene expression 4.3 4.6 4.5
Amin_56k21r probable translation initiation factor E4 gene expression 22.6 28.5 25.4
Amin_65d02r putative Ubiquitin-like domain-containing CTD phosphatase 1 gene expression 3.1 2.3 2.7
Amin_75e04r putative helicase gene expression 24.3 26.1 25.2
Amin_48i15f putative helicase gene expression 26.9 44.8 34.7
Amin_56g23f putative Alpha-L-fucosidase 1 protein glycosylation 1.8 5.5 3.2
Amin_95c08r sialyltransferase protein glycosylation 20.3 23.5 21.9
Amin_87p16r casein family protein kinase signal transduction 9.7 13.0 11.2
Amin_98a08r endonuclease/exonuclease/phosphatase family protein intracellular signalling 3.6 4.8 4.2
Amin_63e03r hypothetical protein similar to Sentrin-specific protease 8 cell cycle control 3.7 3.2 3.4
Amin_68d07f rrm family protein similar to mei2 cell cycle control 2.9 2.5 2.7
Amin_63c06r RNA-binding protein similar to mei2 cell cycle control 1.9 2.6 2.2
Amin_53e04r chlorophyll a-c binding protein chloroplast 5.5 4.9 5.2
Amin_81i24r translation elongation factor P organellar translation 37.4 45.2 41.1
Amin_97a05r putative mitochondrial import receptor subunit tom40 mitochondrial 4.6 5.8 5.1
Amin_70g03r ferrochelatase mitochondrial 3.0 2.8 2.9
Amin_40e21r putative hydrolase hydrolytic enzyme 5.5 3.1 4.1
Amin_82n24r phospholipase/carboxylesterase family protein hydrolytic enzyme 7.2 8.8 8.0
Amin_46a02r Abhydrolase domain-containing protein hydrolytic enzyme 5.6 4.0 4.7
Amin_95b07r putative sulfatase, similar to Ats family arylsulfatases hydrolytic enzyme 3.2 4.2 3.7
Amin_79g11r hypothetical protein similar to various hydrolytic enzymes hydrolytic enzyme 2.1 3.4 2.7
Amin_62h07r hypothetical protein similar to glutathione S-transferase detoxification 4.7 7.0 5.8
Amin_12c01r aminotransferase, class I or II Amino-transferase 2.1 3.0 2.5
Amin_93i12r hypothetical protein similar to branched-chain-amino-acid aminotransferase Amino-transferase 2.5 4.2 3.3
Amin_46c04r hypothetical protein similar to Iron/ascorbate family oxidoreductases Oxido-reductase 7.9 8.8 8.3
Amin_83a03f2 galactose-1-phosphate uridylyltransferase sugar metabolism 5.2 8.6 6.7
Amin_44a04r putative steroid oxidoreductase superfamily member secondary metabolites 3.2 4.0 3.6
Amin_53f01f putative lipolytic enzyme, G-D-S-L family lipid metabolism 3.5 2.3 2.8
Amin_17d04f putative CorA-like Mg2+ transporter protein metal ion transport 3.5 3.7 3.6
Amin_59d02r GFA family protein putative carbon-sulphur lyase 20.4 22.8 21.6
Higher expressed in non-toxic strain AL1T     
Amin_30a05r cyclin-dependent kinases regulatory subunit 1 signal transduction -3.9 -2.9 -3.3
Amin_74g08f dynein heavy chain family protein intracellular transport -5.5 -4.3 -4.9
Amin_44h03r fibronectin type III domain-containing protein putatively involved in signalling -9.2 -11.3 -10.2
Amin_09b02f glutaredoxin family protein DNA nucleotide synthesis -4.7 -3.2 -3.9
Amin_89h11r hypothetical protein containing a putative 'Cold-shock' DNA-binding domain stress response -2.4 -3.2 -2.8
Amin_101h04r inorganic H+ pyrophosphatase, 3'-region. proton pump -3.0 -1.9 -2.4
Amin_16h04r peptide chain release factor 1 translation -8.5 -7.5 -8.0
Amin_42k04f hypothetical protein similar to taurine catabolism dioxygenase TauD putative dioxygenase -2.7 -29.7 -9.0