Skip to main content

Table 2 Haplotype calls of ultra-deep amplicon F5 454 sequencing (run 2) for NA12760 and NA18502.

From: Haplotyping and copy number estimation of the highly polymorphic human beta-defensin locus on 8p23 by 454 amplicon sequencing

 

F5 forward

F5 reverse

MSV HCs

6-8

#

f

7-10a*

#

f

NA12760

TCC

7.399

0,69

CCGgGc

14.683

0,72

 

CCC

1.765

0,16

CCGgAc

2.891

0,14

 

CTG

1.591

0,15

TGGgAc

2.895

0,14

Total

 

10.755

  

20.469

 

NA18502

TCC

8.307

0,80

CCGgGc

17.586

0,83

 

CCC

1.069

0,10

CCGgGa

1.764

0,08

 

CCG

1.006

0,10

CGGgAc

1.950

0,09

Total

 

10.382

  

21.300

 
  1. #: number of HCs; f = HC frequency; *: alleles in lower cases refer to the 2 additionally identified MSVs 9a and 10a.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us