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Figure 4 | BMC Genomics

Figure 4

From: Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms

Figure 4

Haplotype diversity index values for the 12 rice chromosomes in Japanese landraces and modern cultivars. The diversity index was calculated on the basis of a 10-SNP window (see Methods for details). The number of haplotype windows (n) is indicated in parentheses. The x-axis shows the position between the start and end of the haplotype window. The y-axis shows the haplotype diversity index, which is calculated as the number of haplotypes divided by the number of cultivars in each group. The details of Groups 1, 2, and 3 are described in the Results and in additional file 3.

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BMC Genomics

ISSN: 1471-2164

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