Genomic organization of eukaryotic tRNAs

BMC Genomics

Table 2 Quantity structure of linkage analysis results in vertebrates

		Homo Sapiens		Pan Troglodytes		Pongo Pygmaeus		Macaca Mulatta		Mus Musculus		Monodelphis Domestica		Gallus Gallus		Xenopus Tropicalis
Homo Sapiens	493			22,312		20,143		17,154		453,512		167,537		985		6341
				444	494	438	488	438	387	442	22,206	442	20,398	366	155	383	332
				0.9	0.98	0.89	0.95	0.89	0.86	0.9	0.91	0.9	0.94	0.74	0.93	0.78	0.57
Pan Troglodytes	504	8,641				22,375		17,073		176,153		182,022		1,048		6,201
		366	394			497	503	498	391	504	22,963	503	20,847	400	160	395	364
		0.73	0.8			0.99	0.98	0.99	0.87	1	0.94	1	0.96	0.79	0.96	0.78	0.62
Pongo Pygmaeus	512	8,673		7,556				16,838		179,360		183,128		1,033		6,585
		349	368	330	375			494	390	512	22,716	512	20,797	411	158	450	348
		0.68	0.75	0.64	0.74			0.96	0.87	1	0.93	1	0.95	0.8	0.95	0.88	0.59
Macaca Mulatta	450	6,301		5,881		5,488				152,984		152,619		909		5,550
		309	368	284	363	286	333			393	22,588	393	20,646	332	156	355	347
		0.69	0.75	0.63	0.72	0.64	0.65			0.87	0.93	0.87	0.95	0.74	0.94	0.79	0.59
Mus Musculus	24352	6,212		5,958		6,289		5,151				10,073,201		65,044		106,441
		2,030	382	2,294	369	2,126	395	2,211	351			24,336	21,809	20,643	166	20,716	422
		0.08	0.77	0.09	0.73	0.09	0.77	0.09	0.78			1	1	0.85	1	0.85	0.72
Monodelphis Domestica	21810	3,395		3,766		3,677		4,017		190,815				67,383		106,233
		1,750	318	2,071	363	1,846	35	2,123	353	16,634	19,466			19,290	166	19,306	416
		0.08	0.65	0.09	0.72	0.08	0.07	0.1	0.78	0.76	0.8			0.88	1	0.89	0.71
Gallus Gallus	166	44		46		43		42		1,398		1,560				569
		38	38	38	39	35	38	32	38	132	1,169	130	1276			142	236
		0.23	0.08	0.23	0.08	0.21	0.07	0.19	0.08	0.8	0.05	0.78	0.06			0.86	0.4
Xenopus Tropicalis	586	77		74		79		59		912		802		16
		24	72	25	69	23	65	26	53	126	708	115	630	16	12
		0.04	0.15	0.04	0.14	0.04	0.13	0.04	0.12	0.22	0.03	0.2	0.03	0.03	0.07

The upper right triangle quantifies the single-sided linkage results whereas the lower left triangle represents the number of two-sided linkage analysis results. Each table entry is organized as follows: The top row lists the number of synteny associations; Below, the the sizes of domain and range, i.e., the numbers of tDNAs in the two species, are given. The third line gives the corresponding coverage, i.e., the fraction of syntenically conserved tDNAs in the two species.

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