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Table 1 SP and KLF homologs:

From: A survey of well conserved families of C2H2 zinc-finger genes in Daphnia

Family

Homo sapiens

Drosophila melanogaster

Caenorhabditis elegans

Daphnia pulex

Location (D. pulex, v1.1)

SP

SP1

(P08047)

BTD

(Q24266)

SPTF1

(NP_001021466)

SP5

(Dappu-114437)

scaffold_130:263756-265967

 

SP2

(Q02086)

DSp1

(NP_727360)

SPTF2

(NP_495833)

SP1

(Dappu-315784)

scaffold_15:792601-795915

 

SP3/SPR2 (Q02447)

CG5669

(NP_651232)

SPTF3

(NP_493353)

SP8

(Dappu-106303)

scaffold_42:141432-144224

 

SP4/SPR1 (Q02446)

    
 

SP5

(Q6BEB4)

    
 

SP6/KLF14 (Q3SY56)

    
 

SP7

(Q8TDD2)

    
 

SP8

(Q8IXZ3)

    

KLF

KLF1

(Q13351)

CG12029 (NP_647822)

KLF1

(NP_497632)

KLF1A

(Dappu-48391)

scaffold_16:1551074-1551469

 

KLF2

(Q9Y5W3)

CG9895

(NP_611747)

F53F8.1

(NP_507995)

KLF1B

(Dappu-51551)

scaffold_26:196741-197325

 

KLF3

(P57682)

CG3065

(NP_726393)

MUA1

(AAU20846)

KLF1C

(Dappu-243802)

scaffold_26:237754-238940

 

KLF4

(O43474)

CABUT

(NP_608529)

 

KLF1D

(Dappu-262353)

scaffold_168:128271-129531

 

KLF5

(Q13887)

LUNA

(NP_995811)

 

KLF3

(Dappu-27999)

scaffold_1:1214746-1215144

 

KLF6

(Q99612)

BTEB2

(NP_572185)

 

LUNA

(Dappu-310992)

scaffold_3:2311937-2324470

 

KLF7

(O75840)

  

CABUT

(Dappu-312628)

scaffold_6:1962325-1965508

 

KLF8

(O95600)

  

KLF9

(Dappu-315814)

scaffold_15:985228-986723

 

KLF9

(Q13886)

  

BTEB2

(Dappu-50068)

scaffold_21:551156-551927

 

KLF10

(Q13118)

  

KLF1E

(Dappu-262162)

scaffold_164:255538-257421

 

KLF11

(O14901)

    
 

KLF12 (NP_009180)

    
 

KLF13 (NP_057079)

    
 

KLF14

(Q8TD94)

    
 

KLF15

(Q9UIH9)

    
 

KLF16

(Q9BXK1)

    
 

KLF17

(Q5JT82)

    
  1. The updated list of SP and KLF homologs with their accession numbers found in Homo sapiens (Build 36.3 downloaded from ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/ARCHIVE/BUILD.36.3) Drosophila melanogaster (Build 4.1, downloaded from ftp://ftp.ncbi.nih.gov/genomes/Drosophila_melanogaster/RELEASE_4.1/), Caenorhabditis elegans (Build 7.1, downloaded from ftp://ftp.ncbi.nih.gov/genomes/Caenorhabditis_elegans/ARCHIVE/BUILD.7.1) and Daphnia pulex (Version 1.1 downloaded from http://genome.jgi-psf.org/Dappu1/Dappu1.download.ftp.html).
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BMC Genomics

ISSN: 1471-2164

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