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Table 2 The updated list of C2H2 zinc finger protein families, that have expansion in Homo sapiens, Drosophila melanogaster, Caenorhabditi s elegans and Daphnia pulex along with their accession numbers.

From: A survey of well conserved families of C2H2 zinc-finger genes in Daphnia

Family

Homo sapiens

Drosophila melanogaster

Caenorhabditis elegans

Daphnia pulex

Location

(D. pulex, v1.1)

EGR

EGR1 (NP_001955)

SR (NP_524395)

EGRH1 (NP_510467)

SR (Dappu-96734)

5:1579836-1581770

 

EGR2 (NP_000390)

 

EGRH2 (NP_500019)

  
 

EGR3 (NP_004421)

 

EGRH3 (NP_001041062)

  
 

EGR4 (NP_001956)

    

ZFH1/2

ZEB1 (P37275)

ZFH1 (P28166)

ZAG1 (Q94196)

ZFH1 (Dappu-225224)

31:791001-795287

 

ZEB2 (O60315)

    

ZFH3/4

ZFHX2 (Q9C0A1)

ZFH2 (P28167)

ZC123.3 (O45019)

ZFH2 (Dappu-233159)

2:1855545-1862285

 

ZFHX3 (Q15911)

    
 

ZFHX4 (Q86UP3)

    

SPALT

SALL1 (Q9NSC2)

SPALTm (P39770)

SEM4(NP_491997)

SALL (Dappu-111734)

88:97830-103728

 

SALL2 (Q9Y467)

SPALTr (NP_523548)

   
 

SALL3 (Q9BXA9)

    
 

SALL4 (Q9UJQ4)

    

DISCO

BNC1 (Q01954)

DISCO (P23792)

F55C5.11 (Q1ZXU0)

DISCO (Dappu-442650)

91:404649-427757

 

BNC2 (Q6ZN30)

DISCO-r (NP_727938)

   

GFI

GFI1 (Q99684)

SENS (NP_524818)

PAG3 (O02265)

GPS-A (Dappu-113215)

106:388895-391820

 

GFI1b (NP_004179)

  

GPS-B (Dappu-113216)

106:410992-414351

BLIMP1

PRDM1 (O75626)

BLIMP1 (NP_647982)

BLIMP1 (NP_492723)

PRDM1A (Dappu-319330)

29:157096-160885

 

ZNF683 (Q8IZ20)

  

PRDM1B (Dappu-333601)

247:75181-89061

ZEP

HIV-EP1 (P15822)

SHN (NP_476724)

SMA9 (CAF31491)

SHN (Dappu-226641)

60:513635-519628

 

HIV-EP2 (P31629)

    
 

HIV-EP3 (NP_078779)

    

IA1

INSM1 (Q01101)

NERFIN1 (NP_524783)

EGL46 (NP_504694)

NERFIN (Dappu-95880)

3:3754452-3756797

 

INSM2 (NP_115983)

NERFIN2 (NP_524300)

   

EVI1

PRDM16 (Q9HAZ2)

HAM (Q8I7Z8)

EGL46 (CAA91353)

HAM (Dappu-113201)

106:272281-278224

 

EVI1 (Q03112)

CG10348 (NP_609904)

   

FEZ

FEZF1(NP_001019784)

CG31670 (NP_608631)

Y38H8A.5 (NP_502594)

FEZL(Dappu-40822)

2:1567364-1568302

 

FEZF2 (NP_060478)

    

ZFAM1

ZNF706 (Q9Y5V0)

CG18081 (NP_648807)

C01F6.9 (NP_501583)

ZFAM706 (Dappu-230733)

17:391722-392672

  

CG15715 (NP_648808)

K10B3.1b (NP_001024783)

  

ZFAM2

ZNF342 (Q8WUU4)

CG9650 (NP_727173)

F13H6.1b (NP_001122913)

BCL11 (Dappu-323911)

57:749423-752628

 

BCL11A (Q9H165)

    
 

BCL11B (Q9C0K0)

    

ZFAM4

ZNF384 (Q8TF68)

CG2052 (NP_726568)

LIN29 (NP_496545)

RN (Dappu-104384)

30:275315-279360

 

ZNF362 (NP_689706)

RN (NP_996178)

   
  

SQZ (NP_524403)

   

ZFAM11/12

KCMF (NP_064507)

CG11984 (NP_731306)

ZK652.6 (NP_001023029)

KCMF (Dappu-310981)

3:2220789-2222830

  

CG31642 (NP_723159)

   
  

CG31835 (NP_723881)

   
  

CG15286 (NP_609706)

   

ZIC

ZIC1 (Q15915)

OPA (P39768)

REF2 (Q94178)

OPA (Dappu-290567)

104:131019-135418

 

ZIC2 (O95409)

SUG (Q7K0S9)

   
 

ZIC3 (O60481)

    
 

ZIC4(Q8N9L1)

    
 

ZIC5(Q96T25)

    

OVO

OVOL1 (O14753)

OVOrb (P51521)

LIN48 (Q19996)

OVO (Dappu-290491)

191:57-1323

 

OVOL2 (Q9BRP0)

    

SNAIL

SNAIL3 (NP_840101)

SNAIL (P08044)

K02D7 (NP_499902)

Dappu- 53927

39:954341-955431

 

SNAIL2 (O43623)

ESG (P25932)

SCRT1(NP_491001)

Dappu- 129982

110:193847-194734

 

SNAIL1 (O95863)

WOR (NP_476601)

CES1 (NP_492338)

ESG (Dappu-347447)

23:1247838-1249532

 

hSCRT1 (Q9BWW7)

SCRT (Q24140)

 

Dappu- 61957

110:238640-239641

 

hSCRT2 (Q9NQ03)

CG12605 (NP_995996)

   
  

CG12391 (NP_610639)

   
  

CG17181 (NP_612040)

   

GLI

GLI1 (P08151)

CI (P19538)

TRA1(NP_001022880)

CI (Dappu-346973)

3:880659-885822

 

GLI2 (P10070)

LMD (NP_732811)

 

LMD (Dappu-118558)

374:17043-18830

 

GLI3 (P10071)

SUG (NP_996057)

   
 

GLIS1 (Q8NBF1)

    
 

GLIS2 (Q9BZE0)

    
 

GLIS3 (Q8NEA6)

    

ODD

Skipped

OSR1 (Q8TAX0)

ODD (P23803)

ODD1 (NP_498552)

Dappu-238529

11:2090652-2095755

 

OSR2 (Q8N2R0)

SOB (Q9VQS7)

ODD2 (NP_509032)

Dappu-335367

1:2333632-2339817

  

BOWL (Q9VQU9)

 

BOWL (Dappu-347540)

11:2120184-2122082

    

Dappu- 323619

55:200488-243259