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Table 1 List of species genomes analysed in the present study together with basic information on the genome assembly.

From: Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach

Species Genome size [Mb] CG content Evolutionary domain genome assembly version source
Daphnia pulex 197.3 40.8% animal/arthropoda Dappu v1.1 (dpulex_jgi060905) http://genome.jgi-psf.org/Dappu1/Dappu1.home.html
Drosophila melanogaster 168.7 41.7% animal/arthropoda dmel_r5.5_FB2008_01 ftp://ftp.flybase.net/genomes
Apis mellifera 228.6 32.8% animal/arthropoda Amel_2.0 ftp://ftp.hgsc.bcm.tmc.edu/pub/data/Amellifera/fasta/Amel20050120-freeze
Apis mellifera 235.2 32.7% animal/arthropoda Amel_4.0 ftp://ftp.hgsc.bcm.tmc.edu/pub/data/Amellifera/fasta/Amel20060310-freeze
Caenorhabditis elegans 100.3 35.4% animal/nematoda CaeEle-WS160 ftp://ftp.wormbase.org/pub/wormbase/
Homo sapiens 3080.4 40.9% animal/vertebrata build 36.2 ftp://ftp.ncbi.nih.gov/genomes/
Mus musculus 2644.1 41.8% animal/vertebrata build 36.1 ftp://ftp.ncbi.nih.gov/genomes/
Gallus gallus 1031.9 41.3% animal/vertebrata build 2.1 ftp://ftp.ncbi.nih.gov/genomes/
Arabidobsis thaliana 119.2 36.0% plant/magnoliophytha build 6.0 ftp://ftp.ncbi.nih.gov/genomes/
Thalassiosira pseudonana 31.3 46.9% stramopiles/bacillariophytha v3.031306 http://genome.jgi-psf.org/Thaps3/
Ostreococcus lucimarinus 13.2 60.4% viridiplantae/chlorophyta v2.0 http://genome.jgi-psf.org/Ost9901_3/
Neurospora crassa 39.2 49.3% fungi/ascomycota release 7 http://www.broadinstitute.org/annotation/genome/neurospora/MultiHome.html
Saccharomyces cerevisiae 12.1 38.3% fungi/ascomycota build 2.1 ftp://ftp.ncbi.nih.gov/genomes/
  1. For A. mellifera the TR analysis of the complete genome was performed with assembly version 4.0, whereas analysis of the genomic regions was performed with assembly version 2.0 since the annotated features have not yet been officially mapped to the newer assembly.