Skip to main content

Table 3 Tandem repeat types of mono- to trinucleotide repeats for the genome of D. pulex and eleven other taxa.

From: Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach

Repeat type D. pulex D. melanogaster A. mellifera C. elegans H. sapiens M. musculus G. gallus A. thaliana T. pseudonana O. lucimarinus N. crassa S. Cerevisiae min max
A 1199.3 1473.4 4090.9 410.4 3877.7 1934.1 2474.2 1446.3 2.3 1.0 1632.4 1152.5 1.0 4090.9
C 547.8 165.6 75.5 243.0 11.9 173.4 143.6 22.4 10.7 4.0 338.6 5.2 4.0 547.8
AC 804.9 1008.4 359.9 208.7 1288.1 5353.6 204.4 82.7 48.6 11.8 229.7 79.0 11.8 5353.6
AG 955.1 309.1 3168.7 284.2 405.2 2662.5 105.3 426.8 181.7 7.7 217.3 23.4 7.7 3168.7
AT 119.1 644.2 4289.6 232.7 575.4 897.4 316.2 755.5 5.6 0.0 87.7 544.7 0.0 4289.6
CG 5.8 0.1 44.8 1.8 3.1 17.7 0.3 0.1 0.0 3056.1 1.2 0.0 0.0 3056.1
AAC 422.1 211.3 93.7 26.5 166.6 324.3 148.0 128.6 584.2 10.0 544.2 182.5 10.0 584.2
AAG 916.3 27.3 714.8 149.0 73.9 525.1 28.4 515.0 90.0 87.6 332.6 171.7 27.3 916.3
AAT 212.7 426.7 1214.4 90.6 229.8 241.7 169.7 81.1 1.0 0.0 178.6 251.4 0.0 1214.4
ACC 138.8 61.1 94.2 47.8 36.0 134.5 13.4 39.5 121.1 6.9 390.6 9.8 6.9 390.6
ACG 150.5 29.0 166.8 20.0 0.3 3.0 0.5 9.5 127.9 3030.8 158.7 24.2 0.3 3030.8
ACT 77.1 25.7 103.6 14.8 6.8 32.2 4.3 15.1 36.6 1.3 55.4 17.9 1.3 103.6
AGC 495.0 536.9 47.7 36.7 21.8 69.8 28.1 19.8 193.8 12.1 385.3 101.8 12.1 536.9
AGG 73.5 62.7 599.6 19.0 63.8 486.5 33.9 60.7 136.4 58.6 367.0 16.7 16.7 599.6
ATC 89.2 116.5 100.6 65.1 41.8 53.7 7.8 179.2 153.6 8.4 200.8 126.8 7.8 200.8
CCG 88.3 47.8 50.3 11.2 18.7 13.4 16.2 4.8 14.8 767.1 143.7 0.0 0.0 767.1