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Table 4 Repeat characteristics of TR classes with a unit size of 1 to 50 bp for Daphnia pulex, Drosophila melanogaster, and Apis mellifera.

From: Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach

  Daphnia pulex Drosophila melanogaster Apis mellifera
repeat class [bp] total counts mean TR length [bp] sd longest TR [bp] density [bp/Mbp] total counts mean TR length [bp] sd longest TR [bp] density [bp/Mbp] total counts mean TR length [bp] sd longest TR [bp] density [bp/Mbp]
1 17161 16.2 4.1 100 1747.1 15701 17.0 10.1 974 1639.0 54104 17.8 6.0 335 4166.4
2 16104 18.6 5.5 117 1884.8 14511 22.0 13.3 820 1961.6 69036 26.3 17.1 630 7860.8
3 21458 19.7 6.4 174 2662.0 9622 26.1 31.0 710 1543.7 28005 26.3 24.1 932 3181.9
4 4630 21.7 11.2 336 632.9 4770 32.1 65.3 863 939.2 16755 24.1 18.0 943 1742.1
5 3476 24.5 20.2 379 534.8 5984 89.3 189.5 9308 3253.7 11528 26.5 29.6 1348 1313.4
6 2382 27.8 22.9 536 418.0 8220 30.6 52.8 1969 1538.1 8673 27.0 55.0 4290 1008.6
7 1664 23.5 8.9 239 246.4 5133 41.3 73.0 973 1291.0 7810 27.1 16.7 593 914.7
8 1591 24.5 17.0 582 245.3 3204 43.4 89.7 1540 846.5 8585 27.0 15.4 774 1003.3
9 2213 27.4 10.0 191 380.1 2386 39.6 93.9 3013 577.7 8557 28.5 16.8 496 1054.9
10 2041 45.2 89.2 1459 572.3 1535 50.2 86.6 929 473.8 9572 32.7 62.9 2548 1351.8
11 1336 27.8 8.2 161 234.0 2776 369.6 953.0 33316 6269.0 7884 29.3 14.0 592 997.5
12 1814 35.7 41.9 906 404.9 2310 161.4 628.0 23884 2272.4 8313 31.2 20.1 1023 1120.6
13 786 35.3 20.3 234 174.7 530 34.6 34.7 567 113.0 4001 34.4 22.2 595 596.0
14 459 37.9 19.2 247 109.7 419 57.1 59.9 589 147.3 2383 37.4 19.7 385 385.0
15 780 50.9 35.3 491 249.8 415 63.5 70.7 607 161.1 1421 48.8 69.0 1084 299.4
16 177 68.9 96.9 915 76.9 179 56.5 51.6 538 62.2 852 49.2 47.3 785 181.2
17 389 270.2 386.6 3259 650.4 92 60.1 78.2 632 34.1 558 50.6 50.2 850 121.9
18 366 85.9 158.0 2317 196.1 212 68.0 100.7 1311 88.5 509 67.1 89.4 1124 147.1
19 284 59.4 45.9 605 106.1 110 63.5 76.3 538 43.0 309 58.1 43.3 673 77.7
20 155 85.2 81.6 663 83.2 89 98.7 127.4 684 54.1 279 90.7 204.1 2150 109.5
21 363 70.9 33.4 401 162.3 89 204.7 577.3 5404 111.7 221 78.7 71.8 587 75.2
22 91 72.3 47.9 298 40.7 45 443.2 1638.9 11089 122.8 150 72.8 69.5 576 47.3
23 77 97.7 136.1 1192 47.3 175 553.9 838.9 6227 553.7 118 108.7 155.0 1134 55.5
24 350 152.9 139.0 931 337.0 130 110.7 117.4 699 88.4 169 127.7 254.0 2621 93.4
25 43 83.4 74.0 437 22.6 23 248.4 219.9 747 31.1 84 131.0 275.9 2531 47.6
26 62 95.7 74.7 499 37.4 45 125.0 164.5 842 34.7 214 226.1 212.0 1673 200.9
27 128 107.9 69.1 475 87.0 85 93.9 59.1 416 46.7 98 138.6 134.3 700 58.8
28 42 84.6 32.1 231 22.4 46 134.1 129.5 551 38.0 106 167.0 191.0 1261 75.7
29 29 85.1 37.1 201 15.6 14 163.7 183.3 680 14.1 64 144.4 146.0 1052 40.0
30 119 152.5 161.9 1141 110.5 89 146.9 134.2 1085 80.5 136 150.7 194.4 1995 87.5
31 95 94.6 36.0 261 56.6 55 581.4 503.9 2320 181.7 44 167.0 154.4 879 31.8
32 70 93.1 51.7 330 39.9 56 196.7 174.1 744 67.9 56 148.3 133.6 769 35.9
33 85 152.2 159.2 1349 80.9 112 457.9 2864.8 30381 315.8 69 146.4 93.7 487 43.6
34 61 210.2 256.8 1552 80.8 51 444.4 607.3 2944 139.6 77 161.8 125.8 862 53.9
35 94 140.0 106.1 675 82.9 25 849.3 1816.1 9031 130.8 81 164.5 121.1 760 57.2
36 81 155.4 94.6 447 79.3 61 231.1 129.7 569 85.3 360 183.8 94.3 805 285.9
37 25 156.7 163.8 880 24.7 21 150.3 70.2 347 19.4 60 173.1 112.1 557 45.0
38 55 112.7 29.1 260 39.1 20 189.8 162.6 638 23.4 47 137.5 74.6 428 28.0
39 39 153.7 115.3 674 37.8 69 361.5 1153.3 9681 153.5 54 162.5 133.9 816 38.0
40 14 105.4 38.1 234 9.3 10 322.4 277.9 972 19.9 47 231.0 306.6 1984 47.0
41 31 105.8 21.6 158 20.7 3 247.7 230.3 513 4.6 38 160.3 108.1 683 26.3
42 70 139.9 54.9 428 61.6 26 189.9 205.4 980 30.4 32 186.1 158.6 862 25.8
43 38 130.9 35.7 203 31.4 10 364.4 339.9 1045 22.5 17 236.7 218.7 969 17.4
44 10 183.0 95.8 344 11.5 4 915.3 1379.3 2979 22.6 34 200.8 205.5 1288 29.6
45 56 208.9 241.5 1442 73.8 32 409.6 630.3 3489 80.7 41 243.3 288.7 1875 43.2
46 11 363.9 701.5 2475 25.2 12 2057.9 3322.3 11248 152.1 40 180.0 96.8 524 31.2
47 12 313.5 339.9 1263 23.7 12 619.6 611.0 1987 36.0 20 233.1 152.4 561 20.2
48 39 335.3 225.0 857 82.4 12 1126.3 2226.0 7791 83.3 19 253.2 148.5 615 20.8
49 15 218.5 155.7 620 20.7 19 174.5 151.6 700 20.4 32 227.0 204.5 926 30.6
50 37 172.1 60.3 350 40.1 10 245.5 129.0 469 15.1 40 252.0 219.2 1200 43.6
total 81508 26.2   3259 13254 79559 53.6   33316 24199 251702 27.0   4290 28698