Table 5 Characteristics of the CDS, introns, and intergenic regions of D. pulex, D. melanogaster, and A. mellifera.
From: Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach
| Â | Daphnia pulex | Drosophila melanogaster | Apis mellifera | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | CDS | introns | Intergenic | CDS | introns | intergenic | CDS | introns | intergenic |
#sequences | 120611 | 114156 | 36090 | 14817 | 47897 | 12371 | 31734 | 18117 | 23205 |
Min length | 1 | 1 | 0 | 78 | 11 | 1 | 1 | 49 | 0 |
Max length | 12685 | 48487 | 168617 | 69048 | 166135 | 345402 | 7242 | 34351 | 773536 |
Median length | 147.0 | 76.0 | 1294.0 | 1152.0 | 75.0 | 1006.0 | 54.0 | 578.0 | 2986.0 |
Mean length | 212.8 | 284.1 | 3659.1 | 1537.0 | 1080.0 | 5371.1 | 80.7 | 909.4 | 9007.8 |
SD lengths | 279.0 | 1050.9 | 7082.0 | 1704.2 | 4197.7 | 13770.7 | 120.0 | 1245.9 | 22243.2 |
# positions | 25665454 | 32436000 | 132056549 | 22774339 | 51727142 | 66445483 | 2561048 | 16475821 | 209026309 |
A | 0.284 | 0.290 | 0.301 | 0.257 | 0.295 | 0.296 | 0.334 | 0.340 | 0.336 |
C | 0.240 | 0.190 | 0.199 | 0.268 | 0.202 | 0.203 | 0.175 | 0.152 | 0.165 |
G | 0.232 | 0.190 | 0.198 | 0.266 | 0.197 | 0.203 | 0.207 | 0.158 | 0.165 |
T | 0.245 | 0.331 | 0.302 | 0.210 | 0.306 | 0.298 | 0.285 | 0.350 | 0.335 |
CG | 0.472 | 0.380 | 0.397 | 0.534 | 0.399 | 0.406 | 0.381 | 0.310 | 0.329 |
corrected CpG | 0.976 | 1.016 | 1.003 | 0.880 | 0.916 | 0.939 | 1.172 | 1.694 | 1.662 |
corrected CpNpG | 1.088 | 1.082 | 1.063 | 1.086 | 1.068 | 1.099 | 1.005 | 0.962 | 0.959 |
A/T | 1.157 | 0.875 | 0.999 | 1.225 | 0.967 | 0.995 | 1.174 | 0.970 | 1.000 |
C/G | 1.034 | 0.997 | 1.002 | 1.005 | 1.023 | 1.001 | 0.844 | 0.963 | 1.000 |