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Table 1 Summary of read counts across different genomic locations.

From: A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

 

MCF-10a

MCF-7_r1

MCF-7_r2

Total

286,197,907

302,129,896

150,762,975

After error filtering

173,966,873

205,050,087

113,512,672

Mappable

47,524,622

46,330,340

33,697,119

Uniquely mappable

28,371,318

28,882,179

22,223,910

Location

   

   Ensembl known

   

Total

21,709,397

22,031,344

16,980,001

Exon

15,996,190

17,439,762

12,800,399

Intron

5,713,207

4,591,582

4,179,602

   All annotation1

24,037,188

23,854,633

18,830,788

   Exon Junctions

   

Known

1,010,785

1,225,448

-

Putative

16,548

23,540

-

  1. 1Known, predicted and EST transcripts
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BMC Genomics

ISSN: 1471-2164

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