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Table 3 Summary of available experiments by cell line giving proportion of binding sites in the preferred classes

From: Most transcription factor binding sites are in a few mosaic classes of the human genome

Factor

Cell line

 

GM128

K562

HeLa

HepG2

NT2D1

HCT116

GABP

0.991

0.976

    

NRSF

0.844

0.862

    

SRF

0.851

0.794

    

JunD

0.293

0.687

    

cFos

 

0.603

0.475

   

cJun

 

0.602

    

Max

 

0.675

    

SREBP1

   

0.742

  

SREBP2

   

0.734

  

STAT1

 

0.638

0.519

   

TR4

 

0.870

0.871

0.910

  

GATA1

 

0.736

    

GATA2

 

0.625

    

NF-E2

 

0.536

    

TCF7L2

     

0.483

Rad21

 

0.721

    

NFKB

0.686

     

YY1

    

0.876

 

ZNF263

 

0.856

    
  1. This table summarises the ENCODE data for those transcription factors for which we found a motif from the MEME analysis and for which we had permission to use at the time of writing: it includes the JunD-GM128 result which is anomalously low. Other experimental treatments for cJun-K562 gave Ia6 = 0.637, Ig6 = 0.554, Ig30 = 0.573. For STAT1, the treatments were K562-Ia30 and HeLa-Ig30.
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BMC Genomics

ISSN: 1471-2164

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