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Table 3 Summary of available experiments by cell line giving proportion of binding sites in the preferred classes

From: Most transcription factor binding sites are in a few mosaic classes of the human genome

Factor Cell line
  GM128 K562 HeLa HepG2 NT2D1 HCT116
GABP 0.991 0.976     
NRSF 0.844 0.862     
SRF 0.851 0.794     
JunD 0.293 0.687     
cFos   0.603 0.475    
cJun   0.602     
Max   0.675     
SREBP1     0.742   
SREBP2     0.734   
STAT1   0.638 0.519    
TR4   0.870 0.871 0.910   
GATA1   0.736     
GATA2   0.625     
NF-E2   0.536     
TCF7L2       0.483
Rad21   0.721     
NFKB 0.686      
YY1      0.876  
ZNF263   0.856     
  1. This table summarises the ENCODE data for those transcription factors for which we found a motif from the MEME analysis and for which we had permission to use at the time of writing: it includes the JunD-GM128 result which is anomalously low. Other experimental treatments for cJun-K562 gave Ia6 = 0.637, Ig6 = 0.554, Ig30 = 0.573. For STAT1, the treatments were K562-Ia30 and HeLa-Ig30.